RNA–Protein interactions for RNA: ENST00000427635.6

HERC4-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 6,391 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-206ENST00000427635 KIF27Q86VH2 1401 aa7.18□□□□□ -1.26
HERC4-206ENST00000427635 APBB1O00213 710 aa7.18□□□□□ -1.26
HERC4-206ENST00000427635 TMCO4Q5TGY1 634 aa7.18□□□□□ -1.26
HERC4-206ENST00000427635 HSCBQ8IWL3 235 aa7.18□□□□□ -1.26
HERC4-206ENST00000427635 PRDM10Q9NQV6 1147 aa7.18□□□□□ -1.26
HERC4-206ENST00000427635 E9PSI1 815 aa7.17□□□□□ -1.26
HERC4-206ENST00000427635 RBM33Q96EV2 1170 aaKnown RBP7.17□□□□□ -1.26
HERC4-206ENST00000427635 PPP1R1BQ9UD71 204 aaPredicted RBP7.17□□□□□ -1.26
HERC4-206ENST00000427635 EIF3AQ14152 1382 aaKnown RBP7.17□□□□□ -1.26
HERC4-206ENST00000427635 SYTL4Q96C24 671 aaPredicted RBP7.17□□□□□ -1.26
HERC4-206ENST00000427635 CCDC43Q96MW1 224 aaKnown RBP7.17□□□□□ -1.26
HERC4-206ENST00000427635 VPS37DQ86XT2 251 aa7.16□□□□□ -1.26
HERC4-206ENST00000427635 WDR70Q9NW82 654 aa7.16□□□□□ -1.26
HERC4-206ENST00000427635 TPM2P07951 284 aa7.16□□□□□ -1.26
HERC4-206ENST00000427635 AKAP17AQ02040 695 aaKnown RBP7.16□□□□□ -1.26
HERC4-206ENST00000427635 EFCAB2Q5VUJ9 269 aa7.16□□□□□ -1.26
HERC4-206ENST00000427635 LTV1Q96GA3 475 aaPredicted RBP7.16□□□□□ -1.26
HERC4-206ENST00000427635 APPP05067 770 aa7.16□□□□□ -1.26
HERC4-206ENST00000427635 ATF3P18847 181 aa7.16□□□□□ -1.26
HERC4-206ENST00000427635 TERF2IPQ9NYB0 399 aa7.15□□□□□ -1.26
HERC4-206ENST00000427635 TTC5Q8N0Z6 440 aa7.15□□□□□ -1.26
HERC4-206ENST00000427635 DCAF11Q8TEB1 546 aa7.15□□□□□ -1.26
HERC4-206ENST00000427635 ZMYND15Q9H091 742 aa7.15□□□□□ -1.26
HERC4-206ENST00000427635 RBM10P98175 930 aaKnown RBP7.15□□□□□ -1.26
HERC4-206ENST00000427635 CREBRFQ8IUR6 639 aa7.15□□□□□ -1.26
HERC4-206ENST00000427635 CNPY4Q8N129 248 aa7.15□□□□□ -1.26
HERC4-206ENST00000427635 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.15□□□□□ -1.261e-6■■■■■ 164
HERC4-206ENST00000427635 MTMR7Q9Y216 660 aa7.15□□□□□ -1.26
HERC4-206ENST00000427635 BRPF3Q9ULD4 1205 aa7.15□□□□□ -1.27
HERC4-206ENST00000427635 R3HCC1Q9Y3T6 440 aaKnown RBP7.15□□□□□ -1.27
HERC4-206ENST00000427635 LMOD3Q0VAK6 560 aa7.14□□□□□ -1.27
HERC4-206ENST00000427635 LRRFIP1Q32MZ4 808 aaKnown RBP7.14□□□□□ -1.27
HERC4-206ENST00000427635 WASHC2CQ9Y4E1 1318 aa7.14□□□□□ -1.27
HERC4-206ENST00000427635 RSPH4AQ5TD94 716 aa7.14□□□□□ -1.27
HERC4-206ENST00000427635 SYNE3Q6ZMZ3 975 aa7.14□□□□□ -1.27
HERC4-206ENST00000427635 HIRIP3Q9BW71 556 aaPredicted RBP7.13□□□□□ -1.27
HERC4-206ENST00000427635 PPP4R3CPQ6ZMV5 832 aa7.13□□□□□ -1.27
HERC4-206ENST00000427635 HMMRO75330 724 aa7.13□□□□□ -1.27
HERC4-206ENST00000427635 PDS5BQ9NTI5 1447 aa7.13□□□□□ -1.27
HERC4-206ENST00000427635 CERS3Q8IU89 383 aa7.13□□□□□ -1.27
HERC4-206ENST00000427635 SMC4Q9NTJ3 1288 aa7.13□□□□□ -1.27
HERC4-206ENST00000427635 TPD52L1Q16890 204 aaPredicted RBP7.13□□□□□ -1.27
HERC4-206ENST00000427635 CSPP1Q1MSJ5 1256 aa7.13□□□□□ -1.27
HERC4-206ENST00000427635 DHX16O60231 1041 aaKnown RBP7.12□□□□□ -1.27
HERC4-206ENST00000427635 CHMP4CQ96CF2 233 aa7.12□□□□□ -1.27
HERC4-206ENST00000427635 GOLGA3Q08378 1498 aa7.12□□□□□ -1.27
HERC4-206ENST00000427635 RGS3P49796 1198 aa7.12□□□□□ -1.27
HERC4-206ENST00000427635 KIF3AQ9Y496 699 aa7.12□□□□□ -1.27
HERC4-206ENST00000427635 HMGB2P26583 209 aaKnown RBP7.12□□□□□ -1.27
HERC4-206ENST00000427635 NOL8Q76FK4 1167 aaKnown RBP7.12□□□□□ -1.27
HERC4-206ENST00000427635 TPM3P06753 285 aa7.11□□□□□ -1.27
HERC4-206ENST00000427635 PSME1Q06323 249 aa7.11□□□□□ -1.27
HERC4-206ENST00000427635 PPP4R2Q9NY27 417 aa7.11□□□□□ -1.27
HERC4-206ENST00000427635 TRIM6-TRIM34B2RNG4 842 aa7.11□□□□□ -1.27
HERC4-206ENST00000427635 CCDC47Q96A33 483 aaKnown RBP7.11□□□□□ -1.27
HERC4-206ENST00000427635 GOLGA6L1Q8N7Z2 621 aa7.11□□□□□ -1.27
HERC4-206ENST00000427635 ECM2O94769 699 aaPredicted RBP7.11□□□□□ -1.27
HERC4-206ENST00000427635 TSR1Q2NL82 804 aaKnown RBP7.11□□□□□ -1.27
HERC4-206ENST00000427635 PAF1Q8N7H5 531 aa7.1□□□□□ -1.27
HERC4-206ENST00000427635 U2AF1L5P0DN76 240 aaPredicted RBP7.1□□□□□ -1.27
HERC4-206ENST00000427635 U2AF1Q01081 240 aaKnown RBP eCLIP7.1□□□□□ -1.27
HERC4-206ENST00000427635 ZNF428Q96B54 188 aa7.1□□□□□ -1.27
HERC4-206ENST00000427635 GZF1Q9H116 711 aaPredicted RBP7.1□□□□□ -1.27
HERC4-206ENST00000427635 GPATCH11Q8N954 259 aa7.1□□□□□ -1.27
HERC4-206ENST00000427635 KIF3BO15066 747 aa7.1□□□□□ -1.27
HERC4-206ENST00000427635 WDHD1O75717 1129 aaPredicted RBP7.1□□□□□ -1.27
HERC4-206ENST00000427635 WRNQ14191 1432 aaPredicted RBP eCLIP7.1□□□□□ -1.271e-6■■■■■ 58.5
HERC4-206ENST00000427635 PES1O00541 588 aaKnown RBP7.1□□□□□ -1.27
HERC4-206ENST00000427635 FHAD1B1AJZ9 1412 aa7.1□□□□□ -1.27
HERC4-206ENST00000427635 KDM4AO75164 1064 aa7.09□□□□□ -1.27
HERC4-206ENST00000427635 SLC4A10Q6U841 1118 aa7.09□□□□□ -1.27
HERC4-206ENST00000427635 NUTM2FA1L443 756 aa7.09□□□□□ -1.27
HERC4-206ENST00000427635 SETQ01105 290 aaPredicted RBP7.09□□□□□ -1.27
HERC4-206ENST00000427635 ITPRIPQ8IWB1 547 aa7.09□□□□□ -1.27
HERC4-206ENST00000427635 NACADO15069 1562 aa7.09□□□□□ -1.27
HERC4-206ENST00000427635 EEA1Q15075 1411 aa7.09□□□□□ -1.27
HERC4-206ENST00000427635 NEXNQ0ZGT2 675 aa7.09□□□□□ -1.27
HERC4-206ENST00000427635 CCDC180Q9P1Z9 1646 aa7.09□□□□□ -1.28
HERC4-206ENST00000427635 FAM177A1Q8N128 213 aaPredicted RBP7.08□□□□□ -1.28
HERC4-206ENST00000427635 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.08□□□□□ -1.28
HERC4-206ENST00000427635 SYAP1Q96A49 352 aaPredicted RBP7.08□□□□□ -1.28
HERC4-206ENST00000427635 AAMPQ13685 434 aa7.08□□□□□ -1.28
HERC4-206ENST00000427635 SF3A1Q15459 793 aaKnown RBP7.08□□□□□ -1.28
HERC4-206ENST00000427635 MSNP26038 577 aaKnown RBP7.08□□□□□ -1.28
HERC4-206ENST00000427635 ANAPC15P60006 121 aa7.07□□□□□ -1.28
HERC4-206ENST00000427635 TEFQ10587 303 aa7.07□□□□□ -1.28
HERC4-206ENST00000427635 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.07□□□□□ -1.283e-6■■■□□ 17.4
HERC4-206ENST00000427635 SENP3-EIF4A1A0A087X0R7 540 aa7.07□□□□□ -1.28
HERC4-206ENST00000427635 TRIM29Q14134 588 aa7.07□□□□□ -1.28
HERC4-206ENST00000427635 ODF2Q5BJF6 829 aa7.07□□□□□ -1.28
HERC4-206ENST00000427635 NUTM2DQ5VT03 806 aaPredicted RBP7.07□□□□□ -1.28
HERC4-206ENST00000427635 KTN1Q86UP2 1357 aaKnown RBP7.07□□□□□ -1.28
HERC4-206ENST00000427635 ERICH2A1L162 156 aa7.07□□□□□ -1.28
HERC4-206ENST00000427635 NGEFQ8N5V2 710 aa7.07□□□□□ -1.28
HERC4-206ENST00000427635 ROCK2O75116 1388 aaKnown RBP7.07□□□□□ -1.28
HERC4-206ENST00000427635 CEP162Q5TB80 1403 aa7.06□□□□□ -1.28
HERC4-206ENST00000427635 COG3Q96JB2 828 aa7.06□□□□□ -1.28
HERC4-206ENST00000427635 HMGB1P1B2RPK0 211 aaPredicted RBP7.06□□□□□ -1.28
HERC4-206ENST00000427635 IKQ13123 557 aaPredicted RBP7.06□□□□□ -1.28
HERC4-206ENST00000427635 PPP6R1Q9UPN7 881 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms