RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 U2AF1L5P0DN76 240 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-203ENST00000409050 U2AF1Q01081 240 aaKnown RBP eCLIP7.52□□□□□ -1.21
SCN1A-203ENST00000409050 ANKRD20A12PQ8NF67 263 aa7.52□□□□□ -1.21
SCN1A-203ENST00000409050 RAPGEF2Q9Y4G8 1499 aa7.52□□□□□ -1.21
SCN1A-203ENST00000409050 NUP155O75694 1391 aa7.52□□□□□ -1.21
SCN1A-203ENST00000409050 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-203ENST00000409050 SMC4Q9NTJ3 1288 aa7.51□□□□□ -1.21
SCN1A-203ENST00000409050 GOLGA6L19H0YKK7 550 aa7.51□□□□□ -1.21
SCN1A-203ENST00000409050 NUCB2P80303 420 aa7.51□□□□□ -1.21
SCN1A-203ENST00000409050 TOP2AP11388 1531 aaKnown RBP7.5□□□□□ -1.21
SCN1A-203ENST00000409050 HSP90AA2PQ14568 343 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-203ENST00000409050 HSP90AB4PQ58FF6 505 aa7.5□□□□□ -1.21
SCN1A-203ENST00000409050 PDIA4P13667 645 aaKnown RBP7.5□□□□□ -1.21
SCN1A-203ENST00000409050 GORABQ5T7V8 394 aa7.5□□□□□ -1.21
SCN1A-203ENST00000409050 SCAPERQ9BY12 1400 aa7.5□□□□□ -1.21
SCN1A-203ENST00000409050 EIF4G1Q04637 1599 aaKnown RBP7.5□□□□□ -1.21
SCN1A-203ENST00000409050 IPO7O95373 1038 aaKnown RBP7.5□□□□□ -1.21
SCN1A-203ENST00000409050 MIA2Q96PC5 1412 aa7.5□□□□□ -1.21
SCN1A-203ENST00000409050 LETM1O95202 739 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-203ENST00000409050 API5Q9BZZ5 524 aaKnown RBP7.5□□□□□ -1.21
SCN1A-203ENST00000409050 ARGLU1Q9NWB6 273 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-203ENST00000409050 NOM1Q5C9Z4 860 aaKnown RBP7.49□□□□□ -1.21
SCN1A-203ENST00000409050 DDX19BQ9UMR2 479 aa7.49□□□□□ -1.21
SCN1A-203ENST00000409050 SF3A1Q15459 793 aaKnown RBP7.49□□□□□ -1.21
SCN1A-203ENST00000409050 ZKSCAN2Q63HK3 967 aa7.49□□□□□ -1.21
SCN1A-203ENST00000409050 CHMP5Q9NZZ3 219 aa7.49□□□□□ -1.21
SCN1A-203ENST00000409050 CCP110O43303 1012 aa7.49□□□□□ -1.21
SCN1A-203ENST00000409050 GSE1Q14687 1217 aa7.49□□□□□ -1.21
SCN1A-203ENST00000409050 CALRP27797 417 aaKnown RBP7.48□□□□□ -1.21
SCN1A-203ENST00000409050 HSP90B1P14625 803 aaKnown RBP7.48□□□□□ -1.21
SCN1A-203ENST00000409050 RNF20Q5VTR2 975 aa7.48□□□□□ -1.21
SCN1A-203ENST00000409050 NINLQ9Y2I6 1382 aa7.48□□□□□ -1.21
SCN1A-203ENST00000409050 SYNE3Q6ZMZ3 975 aa7.48□□□□□ -1.21
SCN1A-203ENST00000409050 EID1Q9Y6B2 187 aa7.48□□□□□ -1.21
SCN1A-203ENST00000409050 BECN2A8MW95 431 aa7.47□□□□□ -1.21
SCN1A-203ENST00000409050 IL27Q8NEV9 243 aa7.47□□□□□ -1.21
SCN1A-203ENST00000409050 ERCC4Q92889 916 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-203ENST00000409050 DIAPH3Q9NSV4 1193 aa7.47□□□□□ -1.21
SCN1A-203ENST00000409050 KIF7Q2M1P5 1343 aa7.47□□□□□ -1.21
SCN1A-203ENST00000409050 ZKSCAN1P17029 563 aaPredicted RBP7.47□□□□□ -1.21
SCN1A-203ENST00000409050 TAF7LQ5H9L4 462 aa7.47□□□□□ -1.21
SCN1A-203ENST00000409050 TSHZ2Q9NRE2 1034 aa7.47□□□□□ -1.21
SCN1A-203ENST00000409050 MFAP1P55081 439 aaKnown RBP7.47□□□□□ -1.21
SCN1A-203ENST00000409050 CAVIN1Q6NZI2 390 aaKnown RBP7.47□□□□□ -1.21
SCN1A-203ENST00000409050 WASHC2AQ641Q2 1341 aa7.47□□□□□ -1.21
SCN1A-203ENST00000409050 WASHC2CQ9Y4E1 1318 aa7.47□□□□□ -1.21
SCN1A-203ENST00000409050 CCDC144AA2RUR9 1427 aa7.47□□□□□ -1.21
SCN1A-203ENST00000409050 SOGA1O94964 1423 aa7.47□□□□□ -1.21
SCN1A-203ENST00000409050 MCM2P49736 904 aa7.46□□□□□ -1.21
SCN1A-203ENST00000409050 AKAP17AQ02040 695 aaKnown RBP7.46□□□□□ -1.21
SCN1A-203ENST00000409050 CUX1P39880 1505 aa7.46□□□□□ -1.21
SCN1A-203ENST00000409050 CNTLNQ9NXG0 1405 aa7.46□□□□□ -1.21
SCN1A-203ENST00000409050 AMOTL1Q8IY63 956 aa7.46□□□□□ -1.22
SCN1A-203ENST00000409050 H3BQV1 296 aa7.46□□□□□ -1.22
SCN1A-203ENST00000409050 IFFO2Q5TF58 517 aa7.46□□□□□ -1.22
SCN1A-203ENST00000409050 LMOD2Q6P5Q4 547 aa7.46□□□□□ -1.22
SCN1A-203ENST00000409050 FAM184AQ8NB25 1140 aa7.46□□□□□ -1.22
SCN1A-203ENST00000409050 RASSF8Q8NHQ8 419 aa7.46□□□□□ -1.22
SCN1A-203ENST00000409050 TRIM6-TRIM34B2RNG4 842 aa7.46□□□□□ -1.22
SCN1A-203ENST00000409050 TPD52L1Q16890 204 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-203ENST00000409050 EVC2Q86UK5 1308 aa7.45□□□□□ -1.22
SCN1A-203ENST00000409050 VGFO15240 615 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-203ENST00000409050 DDX49Q9Y6V7 483 aaKnown RBP7.45□□□□□ -1.22
SCN1A-203ENST00000409050 CCDC88BA6NC98 1476 aa7.45□□□□□ -1.22
SCN1A-203ENST00000409050 AK7Q96M32 723 aa7.45□□□□□ -1.22
SCN1A-203ENST00000409050 MYO6Q9UM54 1294 aa7.45□□□□□ -1.22
SCN1A-203ENST00000409050 CLSTN1O94985 981 aa7.45□□□□□ -1.22
SCN1A-203ENST00000409050 TRIM29Q14134 588 aa7.45□□□□□ -1.22
SCN1A-203ENST00000409050 RTN4Q9NQC3 1192 aaKnown RBP7.45□□□□□ -1.22
SCN1A-203ENST00000409050 CWC15Q9P013 229 aaKnown RBP7.45□□□□□ -1.22
SCN1A-203ENST00000409050 RDXP35241 583 aaKnown RBP7.45□□□□□ -1.22
SCN1A-203ENST00000409050 RRP1P56182 461 aaKnown RBP7.45□□□□□ -1.22
SCN1A-203ENST00000409050 AEBP2Q6ZN18 517 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-203ENST00000409050 SLKQ9H2G2 1235 aaPredicted RBP7.45□□□□□ -1.22
SCN1A-203ENST00000409050 PDE4AP27815 886 aa7.44□□□□□ -1.22
SCN1A-203ENST00000409050 PIP4K2AP48426 406 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-203ENST00000409050 HMGN5P82970 282 aaKnown RBP7.44□□□□□ -1.22
SCN1A-203ENST00000409050 DCTN1Q14203 1278 aa7.44□□□□□ -1.22
SCN1A-203ENST00000409050 TXLNBQ8N3L3 684 aa7.44□□□□□ -1.22
SCN1A-203ENST00000409050 NAT10Q9H0A0 1025 aaKnown RBP7.44□□□□□ -1.22
SCN1A-203ENST00000409050 MBD3O95983 291 aa7.44□□□□□ -1.22
SCN1A-203ENST00000409050 DDX58O95786 925 aaKnown RBP7.43□□□□□ -1.22
SCN1A-203ENST00000409050 INTS3Q68E01 1043 aaKnown RBP7.43□□□□□ -1.22
SCN1A-203ENST00000409050 CCDC39Q9UFE4 941 aa7.43□□□□□ -1.22
SCN1A-203ENST00000409050 HMGB2P26583 209 aaKnown RBP7.43□□□□□ -1.22
SCN1A-203ENST00000409050 MRE11P49959 708 aa7.43□□□□□ -1.22
SCN1A-203ENST00000409050 NEXNQ0ZGT2 675 aa7.43□□□□□ -1.22
SCN1A-203ENST00000409050 CT47B1P0C2W7 299 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-203ENST00000409050 CCDC66A2RUB6 948 aa7.43□□□□□ -1.22
SCN1A-203ENST00000409050 ERC2O15083 957 aa7.43□□□□□ -1.22
SCN1A-203ENST00000409050 TPRNQ4KMQ1 711 aa7.42□□□□□ -1.22
SCN1A-203ENST00000409050 L3MBTL2Q969R5 705 aa7.42□□□□□ -1.22
SCN1A-203ENST00000409050 MYOM3Q5VTT5 1437 aa7.42□□□□□ -1.22
SCN1A-203ENST00000409050 MARCH6O60337 910 aa7.42□□□□□ -1.22
SCN1A-203ENST00000409050 HIP1O00291 1037 aa7.42□□□□□ -1.22
SCN1A-203ENST00000409050 CSB-PGBD3P0DP91 1061 aa7.42□□□□□ -1.22
SCN1A-203ENST00000409050 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.42□□□□□ -1.22
SCN1A-203ENST00000409050 NOL10Q9BSC4 688 aaKnown RBP7.42□□□□□ -1.22
SCN1A-203ENST00000409050 PRKRIP1Q9H875 184 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-203ENST00000409050 BRD4O60885 1362 aaPredicted RBP7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms