RNA–Protein interactions for RNA: ENST00000362378.1

RNU6-28P-201, Transcript of RNA, U6 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU6-28P, Length 107 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-28P-201ENST00000362378 IL27Q8NEV9 243 aa7.61□□□□□ -1.19
RNU6-28P-201ENST00000362378 PCDHGA4Q9Y5G9 962 aa7.61□□□□□ -1.19
RNU6-28P-201ENST00000362378 KDM4FA0A1W2PPD8 638 aa7.6□□□□□ -1.19
RNU6-28P-201ENST00000362378 NPDC1Q9NQX5 325 aaPredicted RBP7.59□□□□□ -1.19
RNU6-28P-201ENST00000362378 PARP9Q8IXQ6 854 aa7.58□□□□□ -1.2
RNU6-28P-201ENST00000362378 PCDHGA10Q9Y5H3 936 aa7.58□□□□□ -1.2
RNU6-28P-201ENST00000362378 TYW1BQ6NUM6 668 aa7.57□□□□□ -1.2
RNU6-28P-201ENST00000362378 SLAIN1Q8ND83 568 aa7.57□□□□□ -1.2
RNU6-28P-201ENST00000362378 FAM117AQ9C073 453 aa7.57□□□□□ -1.2
RNU6-28P-201ENST00000362378 MAP3K7O43318 606 aa7.56□□□□□ -1.2
RNU6-28P-201ENST00000362378 FBXW7Q969H0 707 aa7.56□□□□□ -1.2
RNU6-28P-201ENST00000362378 DDRGK1Q96HY6 314 aa7.56□□□□□ -1.2
RNU6-28P-201ENST00000362378 JPH4Q96JJ6 628 aa7.56□□□□□ -1.2
RNU6-28P-201ENST00000362378 CDHR5Q9HBB8 845 aa7.56□□□□□ -1.2
RNU6-28P-201ENST00000362378 PLEKHG3A1L390 1219 aa7.55□□□□□ -1.2
RNU6-28P-201ENST00000362378 FOSBP53539 338 aa7.53□□□□□ -1.2
RNU6-28P-201ENST00000362378 TSR1Q2NL82 804 aaKnown RBP7.53□□□□□ -1.2
RNU6-28P-201ENST00000362378 RBM33Q96EV2 1170 aaKnown RBP7.53□□□□□ -1.2
RNU6-28P-201ENST00000362378 TMUB1Q9BVT8 246 aa7.52□□□□□ -1.21
RNU6-28P-201ENST00000362378 TTLL12Q14166 644 aaPredicted RBP7.51□□□□□ -1.21
RNU6-28P-201ENST00000362378 CERKQ8TCT0 537 aa7.51□□□□□ -1.21
RNU6-28P-201ENST00000362378 HOXB3P14651 431 aaPredicted RBP7.5□□□□□ -1.21
RNU6-28P-201ENST00000362378 DOK7Q18PE1 504 aa7.5□□□□□ -1.21
RNU6-28P-201ENST00000362378 GIGYF2Q6Y7W6 1299 aaKnown RBP7.5□□□□□ -1.21
RNU6-28P-201ENST00000362378 REPIN1Q9BWE0 567 aaKnown RBP7.5□□□□□ -1.21
RNU6-28P-201ENST00000362378 ZSWIM6Q9HCJ5 1215 aa7.5□□□□□ -1.21
RNU6-28P-201ENST00000362378 GOPCQ9HD26 462 aa7.5□□□□□ -1.21
RNU6-28P-201ENST00000362378 CLCN1P35523 988 aa7.49□□□□□ -1.21
RNU6-28P-201ENST00000362378 C6orf132Q5T0Z8 1188 aa7.49□□□□□ -1.21
RNU6-28P-201ENST00000362378 ZDHHC16Q969W1 377 aa7.49□□□□□ -1.21
RNU6-28P-201ENST00000362378 MS4A1P11836 297 aa7.48□□□□□ -1.21
RNU6-28P-201ENST00000362378 GPR153Q6NV75 609 aa7.48□□□□□ -1.21
RNU6-28P-201ENST00000362378 TTC13Q8NBP0 860 aa7.48□□□□□ -1.21
RNU6-28P-201ENST00000362378 PHOX2BQ99453 314 aa7.48□□□□□ -1.21
RNU6-28P-201ENST00000362378 RBM27Q9P2N5 1060 aaKnown RBP7.48□□□□□ -1.21
RNU6-28P-201ENST00000362378 RIMBP2O15034 1052 aa7.47□□□□□ -1.21
RNU6-28P-201ENST00000362378 OATP04181 439 aa7.47□□□□□ -1.21
RNU6-28P-201ENST00000362378 NUDT7P0C024 238 aa7.47□□□□□ -1.21
RNU6-28P-201ENST00000362378 ARSIQ5FYB1 569 aa7.47□□□□□ -1.21
RNU6-28P-201ENST00000362378 ZNF454Q8N9F8 522 aa7.47□□□□□ -1.21
RNU6-28P-201ENST00000362378 GPCPD1Q9NPB8 672 aa7.47□□□□□ -1.21
RNU6-28P-201ENST00000362378 KHSRPQ92945 711 aaKnown RBP eCLIP7.46□□□□□ -1.22
RNU6-28P-201ENST00000362378 MDM2Q00987 491 aaPredicted RBP7.45□□□□□ -1.22
RNU6-28P-201ENST00000362378 PADI6Q6TGC4 694 aa7.45□□□□□ -1.22
RNU6-28P-201ENST00000362378 METTL3Q86U44 580 aaKnown RBP7.45□□□□□ -1.22
RNU6-28P-201ENST00000362378 ADAM33Q9BZ11 813 aa7.45□□□□□ -1.22
RNU6-28P-201ENST00000362378 ADGRG1Q9Y653 693 aa7.45□□□□□ -1.22
RNU6-28P-201ENST00000362378 PXYLP1Q8TE99 480 aa7.44□□□□□ -1.22
RNU6-28P-201ENST00000362378 SSTR3P32745 418 aaPredicted RBP7.43□□□□□ -1.22
RNU6-28P-201ENST00000362378 PRSS12P56730 875 aa7.43□□□□□ -1.22
RNU6-28P-201ENST00000362378 FAM161AQ3B820 660 aa7.42□□□□□ -1.22
RNU6-28P-201ENST00000362378 SH3D19Q5HYK7 790 aa7.42□□□□□ -1.22
RNU6-28P-201ENST00000362378 ARXQ96QS3 562 aa7.42□□□□□ -1.22
RNU6-28P-201ENST00000362378 ZMYND15Q9H091 742 aa7.42□□□□□ -1.22
RNU6-28P-201ENST00000362378 FAM217BQ9NTX9 383 aaPredicted RBP7.42□□□□□ -1.22
RNU6-28P-201ENST00000362378 PSDA5PKW4 1024 aaPredicted RBP7.41□□□□□ -1.22
RNU6-28P-201ENST00000362378 SNPHO15079 494 aa7.41□□□□□ -1.22
RNU6-28P-201ENST00000362378 ZNF710Q8N1W2 664 aa7.41□□□□□ -1.22
RNU6-28P-201ENST00000362378 CDCA7LQ96GN5 454 aa7.41□□□□□ -1.22
RNU6-28P-201ENST00000362378 PCMTD1Q96MG8 357 aaPredicted RBP7.41□□□□□ -1.22
RNU6-28P-201ENST00000362378 KRTAP3-3Q9BYR6 98 aa7.41□□□□□ -1.22
RNU6-28P-201ENST00000362378 KRTAP3-2Q9BYR7 98 aa7.41□□□□□ -1.22
RNU6-28P-201ENST00000362378 LHX6Q9UPM6 363 aa7.41□□□□□ -1.22
RNU6-28P-201ENST00000362378 PPP4R3BQ5MIZ7 849 aa7.4□□□□□ -1.22
RNU6-28P-201ENST00000362378 RSPH6AQ9H0K4 717 aa7.4□□□□□ -1.22
RNU6-28P-201ENST00000362378 BCL2L12Q9HB09 334 aa7.4□□□□□ -1.22
RNU6-28P-201ENST00000362378 FLIIQ13045 1269 aa7.39□□□□□ -1.23
RNU6-28P-201ENST00000362378 RBM46Q8TBY0 533 aaKnown RBP7.39□□□□□ -1.23
RNU6-28P-201ENST00000362378 MARVELD3Q96A59 401 aa7.39□□□□□ -1.23
RNU6-28P-201ENST00000362378 SUPT5HO00267 1087 aaKnown RBP7.38□□□□□ -1.23
RNU6-28P-201ENST00000362378 ONECUT3O60422 494 aaPredicted RBP7.38□□□□□ -1.23
RNU6-28P-201ENST00000362378 SKIV2LQ15477 1246 aaKnown RBP7.38□□□□□ -1.23
RNU6-28P-201ENST00000362378 BEGAINQ9BUH8 593 aa7.38□□□□□ -1.23
RNU6-28P-201ENST00000362378 FAM198AQ9UFP1 575 aa7.38□□□□□ -1.23
RNU6-28P-201ENST00000362378 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.37□□□□□ -1.23
RNU6-28P-201ENST00000362378 HOXB1P14653 301 aaPredicted RBP7.37□□□□□ -1.23
RNU6-28P-201ENST00000362378 COL9A1P20849 921 aa7.37□□□□□ -1.23
RNU6-28P-201ENST00000362378 NLRP7Q8WX94 980 aa7.37□□□□□ -1.23
RNU6-28P-201ENST00000362378 EYA1Q99502 592 aa7.37□□□□□ -1.23
RNU6-28P-201ENST00000362378 PPP1R3GB7ZBB8 358 aa7.36□□□□□ -1.23
RNU6-28P-201ENST00000362378 PTPREP23469 700 aa7.35□□□□□ -1.23
RNU6-28P-201ENST00000362378 RCCD1A6NED2 376 aa7.34□□□□□ -1.23
RNU6-28P-201ENST00000362378 TSKSQ9UJT2 592 aa7.34□□□□□ -1.23
RNU6-28P-201ENST00000362378 DIXDC1Q155Q3 683 aa7.33□□□□□ -1.24
RNU6-28P-201ENST00000362378 MYSM1Q5VVJ2 828 aa7.33□□□□□ -1.24
RNU6-28P-201ENST00000362378 TRIM6-TRIM34B2RNG4 842 aa7.32□□□□□ -1.24
RNU6-28P-201ENST00000362378 PROCA1Q8NCQ7 364 aaPredicted RBP7.32□□□□□ -1.24
RNU6-28P-201ENST00000362378 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.32□□□□□ -1.24
RNU6-28P-201ENST00000362378 NBPF26B4DH59 902 aa7.31□□□□□ -1.24
RNU6-28P-201ENST00000362378 NUDT18Q6ZVK8 323 aa7.31□□□□□ -1.24
RNU6-28P-201ENST00000362378 TBC1D2Q9BYX2 928 aa7.31□□□□□ -1.24
RNU6-28P-201ENST00000362378 C3orf80F5H4A9 247 aa7.3□□□□□ -1.24
RNU6-28P-201ENST00000362378 CD46P15529 392 aa7.3□□□□□ -1.24
RNU6-28P-201ENST00000362378 DNAJB2P25686 324 aa7.3□□□□□ -1.24
RNU6-28P-201ENST00000362378 PACS2Q86VP3 889 aa7.3□□□□□ -1.24
RNU6-28P-201ENST00000362378 HOMEZQ8IX15 550 aa7.3□□□□□ -1.24
RNU6-28P-201ENST00000362378 TATDN2Q93075 761 aa7.3□□□□□ -1.24
RNU6-28P-201ENST00000362378 RNF166Q96A37 237 aaPredicted RBP7.3□□□□□ -1.24
RNU6-28P-201ENST00000362378 POLR3EQ9NVU0 708 aa7.3□□□□□ -1.24
RNU6-28P-201ENST00000362378 A6NJR5 290 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms