RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 ADGRL2O95490 1459 aa15.32■□□□□ 0.04
CLSTN3-201ENST00000266546 ARID4BQ4LE39 1312 aaPredicted RBP15.32■□□□□ 0.04
CLSTN3-201ENST00000266546 STAC3Q96MF2 364 aa15.31■□□□□ 0.04
CLSTN3-201ENST00000266546 FANCAO15360 1455 aa15.31■□□□□ 0.04
CLSTN3-201ENST00000266546 ADGRL1O94910 1474 aa15.3■□□□□ 0.04
CLSTN3-201ENST00000266546 ERICH6BQ5W0A0 696 aa15.29■□□□□ 0.04
CLSTN3-201ENST00000266546 HSPA5P11021 654 aaKnown RBP15.28■□□□□ 0.04
CLSTN3-201ENST00000266546 CANXP27824 592 aaKnown RBP15.28■□□□□ 0.04
CLSTN3-201ENST00000266546 CDCA8Q53HL2 280 aa15.28■□□□□ 0.04
CLSTN3-201ENST00000266546 ARHGEF5Q12774 1597 aa15.27■□□□□ 0.04
CLSTN3-201ENST00000266546 SENP3-EIF4A1A0A087X0R7 540 aa15.27■□□□□ 0.03
CLSTN3-201ENST00000266546 RTN4Q9NQC3 1192 aaKnown RBP15.27■□□□□ 0.03
CLSTN3-201ENST00000266546 WASHC2CQ9Y4E1 1318 aa15.27■□□□□ 0.03
CLSTN3-201ENST00000266546 MAPKBP1O60336 1514 aa15.26■□□□□ 0.03
CLSTN3-201ENST00000266546 SYCP2Q9BX26 1530 aa15.26■□□□□ 0.03
CLSTN3-201ENST00000266546 ANKRD30BQ9BXX2 1392 aa15.26■□□□□ 0.03
CLSTN3-201ENST00000266546 GCC2Q8IWJ2 1684 aa15.25■□□□□ 0.03
CLSTN3-201ENST00000266546 ERCC6L2Q5T890 1561 aa15.25■□□□□ 0.03
CLSTN3-201ENST00000266546 LRRIQ1Q96JM4 1722 aa15.25■□□□□ 0.03
CLSTN3-201ENST00000266546 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.24■□□□□ 0.031e-6■■■■■ 42.9
CLSTN3-201ENST00000266546 DUOX2Q9NRD8 1548 aa15.24■□□□□ 0.03
CLSTN3-201ENST00000266546 RTEL1-TNFRSF6BF6WH68 1400 aa15.24■□□□□ 0.03
CLSTN3-201ENST00000266546 PPM1GO15355 546 aaPredicted RBP15.23■□□□□ 0.03
CLSTN3-201ENST00000266546 NEFMP07197 916 aa15.23■□□□□ 0.03
CLSTN3-201ENST00000266546 SENP3Q9H4L4 574 aaPredicted RBP15.23■□□□□ 0.03
CLSTN3-201ENST00000266546 LAS1LQ9Y4W2 734 aaKnown RBP15.23■□□□□ 0.03
CLSTN3-201ENST00000266546 ZCCHC11Q5TAX3 1644 aaKnown RBP15.23■□□□□ 0.03
CLSTN3-201ENST00000266546 MYO5CQ9NQX4 1742 aa15.23■□□□□ 0.03
CLSTN3-201ENST00000266546 DDRGK1Q96HY6 314 aa15.23■□□□□ 0.03
CLSTN3-201ENST00000266546 ERBINQ96RT1 1412 aa15.23■□□□□ 0.03
CLSTN3-201ENST00000266546 ADGBQ8N7X0 1667 aa15.22■□□□□ 0.03
CLSTN3-201ENST00000266546 ROCK2O75116 1388 aaKnown RBP15.21■□□□□ 0.03
CLSTN3-201ENST00000266546 PREX2Q70Z35 1606 aa15.21■□□□□ 0.03
CLSTN3-201ENST00000266546 DENND4BO75064 1496 aaPredicted RBP15.19■□□□□ 0.02
CLSTN3-201ENST00000266546 RPRD2Q5VT52 1461 aaKnown RBP15.19■□□□□ 0.02
CLSTN3-201ENST00000266546 FANCIQ9NVI1 1328 aa15.19■□□□□ 0.02
CLSTN3-201ENST00000266546 ARAP3Q8WWN8 1544 aa15.18■□□□□ 0.02
CLSTN3-201ENST00000266546 ZNF518AQ6AHZ1 1483 aa15.18■□□□□ 0.02
CLSTN3-201ENST00000266546 MBD5Q9P267 1494 aa15.18■□□□□ 0.02
CLSTN3-201ENST00000266546 GLIPR1L2Q4G1C9 344 aa15.18■□□□□ 0.02
CLSTN3-201ENST00000266546 DHX29Q7Z478 1369 aaKnown RBP15.18■□□□□ 0.02
CLSTN3-201ENST00000266546 HDGFP51858 240 aaKnown RBP15.17■□□□□ 0.02
CLSTN3-201ENST00000266546 TMF1P82094 1093 aa15.17■□□□□ 0.02
CLSTN3-201ENST00000266546 TRAPPC8Q9Y2L5 1435 aa15.17■□□□□ 0.02
CLSTN3-201ENST00000266546 UPF2Q9HAU5 1272 aaKnown RBP15.16■□□□□ 0.02
CLSTN3-201ENST00000266546 CDC42BPAQ5VT25 1732 aa15.16■□□□□ 0.02
CLSTN3-201ENST00000266546 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.16■□□□□ 0.02
CLSTN3-201ENST00000266546 TTC37Q6PGP7 1564 aa15.14■□□□□ 0.01
CLSTN3-201ENST00000266546 TEX14Q8IWB6 1497 aa15.14■□□□□ 0.01
CLSTN3-201ENST00000266546 SAMD9LQ8IVG5 1584 aa15.14■□□□□ 0.01
CLSTN3-201ENST00000266546 EIF3AQ14152 1382 aaKnown RBP15.14■□□□□ 0.01
CLSTN3-201ENST00000266546 CFAP74Q9C0B2 1584 aa15.13■□□□□ 0.01
CLSTN3-201ENST00000266546 PLEKHG5O94827 1062 aa15.13■□□□□ 0.01
CLSTN3-201ENST00000266546 ARXQ96QS3 562 aa15.13■□□□□ 0.01
CLSTN3-201ENST00000266546 RAPGEF3O95398 923 aa15.12■□□□□ 0.01
CLSTN3-201ENST00000266546 USP47Q96K76 1375 aa15.12■□□□□ 0.01
CLSTN3-201ENST00000266546 NEO1Q92859 1461 aa15.12■□□□□ 0.01
CLSTN3-201ENST00000266546 MLECQ14165 292 aa15.11■□□□□ 0.01
CLSTN3-201ENST00000266546 PZPP20742 1482 aa15.1■□□□□ 0.01
CLSTN3-201ENST00000266546 IPO9Q96P70 1041 aaKnown RBP15.1■□□□□ 0.01
CLSTN3-201ENST00000266546 ABCC1P33527 1531 aa15.09■□□□□ 0.01
CLSTN3-201ENST00000266546 FAM135AQ9P2D6 1515 aa15.09■□□□□ 0.01
CLSTN3-201ENST00000266546 C14orf37Q86TY3 774 aa15.09■□□□□ 0.01
CLSTN3-201ENST00000266546 A2MP01023 1474 aa15.08■□□□□ 0.01
CLSTN3-201ENST00000266546 MAST1Q9Y2H9 1570 aa15.08■□□□□ 0
CLSTN3-201ENST00000266546 VGFO15240 615 aaPredicted RBP15.08■□□□□ 0
CLSTN3-201ENST00000266546 WDR43Q15061 677 aaKnown RBP eCLIP15.08■□□□□ 0
CLSTN3-201ENST00000266546 ATP7AQ04656 1500 aa15.07■□□□□ 0
CLSTN3-201ENST00000266546 PPP6R1Q9UPN7 881 aa15.07■□□□□ 0
CLSTN3-201ENST00000266546 NBPF8Q3BBV2 869 aa15.06■□□□□ 0
CLSTN3-201ENST00000266546 SLC52A1Q9NWF4 448 aa15.04■□□□□ -0
CLSTN3-201ENST00000266546 KNSTRNQ9Y448 316 aa15.04■□□□□ -0
CLSTN3-201ENST00000266546 ST20-MTHFSA0A0A6YYL1 179 aa15.04■□□□□ -0
CLSTN3-201ENST00000266546 CROCC2H7BZ55 1655 aa15.04■□□□□ -0
CLSTN3-201ENST00000266546 ANP32BQ92688 251 aaKnown RBP15.03■□□□□ -0
CLSTN3-201ENST00000266546 RPGRIP1LQ68CZ1 1315 aa15.03■□□□□ -0
CLSTN3-201ENST00000266546 CDC42BPBQ9Y5S2 1711 aa15.03■□□□□ -0
CLSTN3-201ENST00000266546 CCDC7Q96M83 1385 aa15.03■□□□□ -0
CLSTN3-201ENST00000266546 ABCA9Q8IUA7 1624 aa15.03■□□□□ -0
CLSTN3-201ENST00000266546 PLXNC1O60486 1568 aa15.03■□□□□ -0
CLSTN3-201ENST00000266546 POGZQ7Z3K3 1410 aa15.03■□□□□ -0
CLSTN3-201ENST00000266546 BECN1Q14457 450 aa15.02■□□□□ -0
CLSTN3-201ENST00000266546 HSP90AA1P07900 732 aaKnown RBP15.02□□□□□ -0.01
CLSTN3-201ENST00000266546 A0A0G2JS52 829 aa15.01□□□□□ -0.01
CLSTN3-201ENST00000266546 KDM5DQ9BY66 1539 aa15.01□□□□□ -0.01
CLSTN3-201ENST00000266546 ARHGEF12Q9NZN5 1544 aa15.01□□□□□ -0.01
CLSTN3-201ENST00000266546 POGKQ9P215 609 aa15□□□□□ -0.01
CLSTN3-201ENST00000266546 NUDCQ9Y266 331 aa15□□□□□ -0.01
CLSTN3-201ENST00000266546 KDM6BO15054 1643 aa15□□□□□ -0.01
CLSTN3-201ENST00000266546 TCERG1O14776 1098 aaKnown RBP14.99□□□□□ -0.01
CLSTN3-201ENST00000266546 RALBP1Q15311 655 aa14.99□□□□□ -0.01
CLSTN3-201ENST00000266546 RGS3P49796 1198 aa14.97□□□□□ -0.01
CLSTN3-201ENST00000266546 MLH3Q9UHC1 1453 aa14.97□□□□□ -0.01
CLSTN3-201ENST00000266546 CNTLNQ9NXG0 1405 aa14.97□□□□□ -0.01
CLSTN3-201ENST00000266546 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.96□□□□□ -0.01
CLSTN3-201ENST00000266546 KIF7Q2M1P5 1343 aa14.96□□□□□ -0.01
CLSTN3-201ENST00000266546 CC2D1BQ5T0F9 858 aaKnown RBP14.96□□□□□ -0.01
CLSTN3-201ENST00000266546 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.96□□□□□ -0.01
CLSTN3-201ENST00000266546 KTN1Q86UP2 1357 aaKnown RBP14.96□□□□□ -0.01
CLSTN3-201ENST00000266546 WASHC2AQ641Q2 1341 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms