RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MORC1Q86VD1 984 aa17.93■□□□□ 0.46
LDLR-201ENST00000252444 TCOF1Q13428 1488 aaKnown RBP17.93■□□□□ 0.46
LDLR-201ENST00000252444 ANKRD30BQ9BXX2 1392 aa17.92■□□□□ 0.46
LDLR-201ENST00000252444 UHRF1BP1LA0JNW5 1464 aa17.92■□□□□ 0.46
LDLR-201ENST00000252444 FANCAO15360 1455 aa17.92■□□□□ 0.46
LDLR-201ENST00000252444 ERBINQ96RT1 1412 aa17.91■□□□□ 0.46
LDLR-201ENST00000252444 NUP153P49790 1475 aaKnown RBP17.91■□□□□ 0.46
LDLR-201ENST00000252444 NGEFQ8N5V2 710 aa17.9■□□□□ 0.46
LDLR-201ENST00000252444 DUOX2Q9NRD8 1548 aa17.9■□□□□ 0.46
LDLR-201ENST00000252444 ATP10BO94823 1461 aa17.89■□□□□ 0.45
LDLR-201ENST00000252444 SCAF1Q9H7N4 1312 aaKnown RBP17.88■□□□□ 0.45
LDLR-201ENST00000252444 CEP170Q5SW79 1584 aa17.87■□□□□ 0.45
LDLR-201ENST00000252444 ZNF518AQ6AHZ1 1483 aa17.87■□□□□ 0.45
LDLR-201ENST00000252444 ZNF644Q9H582 1327 aaPredicted RBP17.87■□□□□ 0.45
LDLR-201ENST00000252444 ABCC5O15440 1437 aa17.87■□□□□ 0.45
LDLR-201ENST00000252444 RTEL1-TNFRSF6BF6WH68 1400 aa17.86■□□□□ 0.45
LDLR-201ENST00000252444 UPF2Q9HAU5 1272 aaKnown RBP17.86■□□□□ 0.45
LDLR-201ENST00000252444 ASXL2Q76L83 1435 aa17.85■□□□□ 0.45
LDLR-201ENST00000252444 GPATCH8Q9UKJ3 1502 aaKnown RBP17.85■□□□□ 0.45
LDLR-201ENST00000252444 CGNL1Q0VF96 1302 aa17.85■□□□□ 0.45
LDLR-201ENST00000252444 USP47Q96K76 1375 aa17.84■□□□□ 0.45
LDLR-201ENST00000252444 NAIPQ13075 1403 aa17.84■□□□□ 0.45
LDLR-201ENST00000252444 ABCC10Q5T3U5 1492 aa17.83■□□□□ 0.45
LDLR-201ENST00000252444 DISP1Q96F81 1524 aa17.83■□□□□ 0.45
LDLR-201ENST00000252444 FOXD1Q16676 465 aa17.83■□□□□ 0.44
LDLR-201ENST00000252444 LMOD3Q0VAK6 560 aa17.82■□□□□ 0.44
LDLR-201ENST00000252444 MIER1Q8N108 512 aa17.82■□□□□ 0.44
LDLR-201ENST00000252444 THEMISQ8N1K5 641 aaPredicted RBP17.82■□□□□ 0.44
LDLR-201ENST00000252444 AFAP1Q8N556 730 aa17.81■□□□□ 0.44
LDLR-201ENST00000252444 DHX29Q7Z478 1369 aaKnown RBP17.8■□□□□ 0.44
LDLR-201ENST00000252444 GTF3C3Q9Y5Q9 886 aa17.79■□□□□ 0.44
LDLR-201ENST00000252444 ERICH6BQ5W0A0 696 aa17.78■□□□□ 0.44
LDLR-201ENST00000252444 STK26Q9P289 416 aa17.78■□□□□ 0.44
LDLR-201ENST00000252444 NCOA1Q15788 1441 aa17.78■□□□□ 0.44
LDLR-201ENST00000252444 NLRP13Q86W25 1043 aa17.78■□□□□ 0.44
LDLR-201ENST00000252444 WASHC2AQ641Q2 1341 aa17.77■□□□□ 0.44
LDLR-201ENST00000252444 CENPJQ9HC77 1338 aaPredicted RBP17.77■□□□□ 0.44
LDLR-201ENST00000252444 FAM135AQ9P2D6 1515 aa17.77■□□□□ 0.43
LDLR-201ENST00000252444 PDE3BQ13370 1112 aa17.77■□□□□ 0.43
LDLR-201ENST00000252444 CFAP44Q96MT7 982 aa17.76■□□□□ 0.43
LDLR-201ENST00000252444 NEO1Q92859 1461 aa17.76■□□□□ 0.43
LDLR-201ENST00000252444 CNTLNQ9NXG0 1405 aa17.75■□□□□ 0.43
LDLR-201ENST00000252444 MYBBP1AQ9BQG0 1328 aaKnown RBP17.74■□□□□ 0.43
LDLR-201ENST00000252444 ANP32AP39687 249 aaKnown RBP17.74■□□□□ 0.43
LDLR-201ENST00000252444 RTL5Q5HYW3 569 aaPredicted RBP17.73■□□□□ 0.43
LDLR-201ENST00000252444 HIRIP3Q9BW71 556 aaPredicted RBP17.73■□□□□ 0.43
LDLR-201ENST00000252444 ZBTB7CA1YPR0 619 aa17.73■□□□□ 0.43
LDLR-201ENST00000252444 CC2D1BQ5T0F9 858 aaKnown RBP17.73■□□□□ 0.43
LDLR-201ENST00000252444 HDAC5Q9UQL6 1122 aa17.73■□□□□ 0.43
LDLR-201ENST00000252444 RTF1Q92541 710 aaKnown RBP17.71■□□□□ 0.43
LDLR-201ENST00000252444 CCDC136Q96JN2 1154 aa17.71■□□□□ 0.43
LDLR-201ENST00000252444 NGDNQ8NEJ9 315 aaKnown RBP17.71■□□□□ 0.43
LDLR-201ENST00000252444 ABCA8O94911 1581 aa17.71■□□□□ 0.43
LDLR-201ENST00000252444 DNMT1P26358 1616 aaKnown RBP17.7■□□□□ 0.42
LDLR-201ENST00000252444 ADGRL2O95490 1459 aa17.69■□□□□ 0.42
LDLR-201ENST00000252444 PPM1GO15355 546 aaPredicted RBP17.69■□□□□ 0.42
LDLR-201ENST00000252444 ARHGEF5Q12774 1597 aa17.69■□□□□ 0.42
LDLR-201ENST00000252444 LMOD2Q6P5Q4 547 aa17.68■□□□□ 0.42
LDLR-201ENST00000252444 A2MP01023 1474 aa17.68■□□□□ 0.42
LDLR-201ENST00000252444 U2SURPO15042 1029 aaKnown RBP17.68■□□□□ 0.42
LDLR-201ENST00000252444 KDM5BQ9UGL1 1544 aa17.67■□□□□ 0.42
LDLR-201ENST00000252444 FKBP8Q14318 412 aa17.67■□□□□ 0.42
LDLR-201ENST00000252444 IPO8O15397 1037 aaKnown RBP17.67■□□□□ 0.42
LDLR-201ENST00000252444 CHD1O14646 1710 aa17.66■□□□□ 0.42
LDLR-201ENST00000252444 FTSJ3Q8IY81 847 aaKnown RBP17.66■□□□□ 0.42
LDLR-201ENST00000252444 MAPKBP1O60336 1514 aa17.65■□□□□ 0.42
LDLR-201ENST00000252444 COG3Q96JB2 828 aa17.65■□□□□ 0.42
LDLR-201ENST00000252444 TRAK1Q9UPV9 953 aa17.65■□□□□ 0.42
LDLR-201ENST00000252444 SYCP2Q9BX26 1530 aa17.65■□□□□ 0.42
LDLR-201ENST00000252444 ST20-MTHFSA0A0A6YYL1 179 aa17.64■□□□□ 0.42
LDLR-201ENST00000252444 EIF2AK4Q9P2K8 1649 aaKnown RBP17.64■□□□□ 0.41
LDLR-201ENST00000252444 ADGBQ8N7X0 1667 aa17.63■□□□□ 0.41
LDLR-201ENST00000252444 ATAD2Q6PL18 1390 aa17.63■□□□□ 0.41
LDLR-201ENST00000252444 ANKLE2Q86XL3 938 aa17.62■□□□□ 0.41
LDLR-201ENST00000252444 ARAP3Q8WWN8 1544 aa17.62■□□□□ 0.41
LDLR-201ENST00000252444 CCDC7Q96M83 1385 aa17.62■□□□□ 0.41
LDLR-201ENST00000252444 MYO5CQ9NQX4 1742 aa17.61■□□□□ 0.41
LDLR-201ENST00000252444 SAFB2Q14151 953 aaKnown RBP eCLIP17.61■□□□□ 0.41
LDLR-201ENST00000252444 CASC1Q6TDU7 716 aa17.61■□□□□ 0.41
LDLR-201ENST00000252444 NINLQ9Y2I6 1382 aa17.6■□□□□ 0.41
LDLR-201ENST00000252444 PSME1Q06323 249 aa17.58■□□□□ 0.41
LDLR-201ENST00000252444 ZNF692Q9BU19 519 aaPredicted RBP17.58■□□□□ 0.41
LDLR-201ENST00000252444 RPRD2Q5VT52 1461 aaKnown RBP17.58■□□□□ 0.4
LDLR-201ENST00000252444 PAK3O75914 559 aaPredicted RBP17.57■□□□□ 0.4
LDLR-201ENST00000252444 RAPGEF3O95398 923 aa17.57■□□□□ 0.4
LDLR-201ENST00000252444 HMGB2P26583 209 aaKnown RBP17.57■□□□□ 0.4
LDLR-201ENST00000252444 GPRASP1Q5JY77 1395 aa17.57■□□□□ 0.4
LDLR-201ENST00000252444 TXNDC2Q86VQ3 553 aa17.57■□□□□ 0.4
LDLR-201ENST00000252444 ATF3P18847 181 aa17.57■□□□□ 0.4
LDLR-201ENST00000252444 SALL2Q9Y467 1007 aaPredicted RBP17.57■□□□□ 0.4
LDLR-201ENST00000252444 MAGI2Q86UL8 1455 aa17.56■□□□□ 0.4
LDLR-201ENST00000252444 AMPHP49418 695 aa17.56■□□□□ 0.4
LDLR-201ENST00000252444 U2AF1L5P0DN76 240 aaPredicted RBP17.55■□□□□ 0.4
LDLR-201ENST00000252444 U2AF1Q01081 240 aaKnown RBP eCLIP17.55■□□□□ 0.4
LDLR-201ENST00000252444 ATP7AQ04656 1500 aa17.54■□□□□ 0.4
LDLR-201ENST00000252444 CSB-PGBD3P0DP91 1061 aa17.54■□□□□ 0.4
LDLR-201ENST00000252444 PANK3Q9H999 370 aa17.54■□□□□ 0.4
LDLR-201ENST00000252444 ARHGEF12Q9NZN5 1544 aa17.54■□□□□ 0.4
LDLR-201ENST00000252444 BRD4O60885 1362 aaPredicted RBP17.53■□□□□ 0.4
LDLR-201ENST00000252444 DMRT2Q9Y5R5 561 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms