RNA–Protein interactions for RNA: ENSMUST00000109477.1

Ccdc88a-202, Transcript of Girdin, mousemouse

TSL 2 BASIC

Gene Ccdc88a, Length 1,716 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-202ENSMUST00000109477 Abca17E9PX95 1733 aa30.65■■■□□ 2.5
Ccdc88a-202ENSMUST00000109477 Zmym4A2A791 1549 aaKnown RBP30.64■■■□□ 2.5
Ccdc88a-202ENSMUST00000109477 Kif14L0N7N1 1674 aaKnown RBP30.63■■■□□ 2.49
Ccdc88a-202ENSMUST00000109477 NpatQ8BMA5 1420 aa30.63■■■□□ 2.49
Ccdc88a-202ENSMUST00000109477 Hspa5P20029 655 aaKnown RBP30.63■■■□□ 2.49
Ccdc88a-202ENSMUST00000109477 Clstn2Q9ER65 966 aa30.61■■■□□ 2.49
Ccdc88a-202ENSMUST00000109477 Ttll5Q8CHB8 1328 aa30.61■■■□□ 2.49
Ccdc88a-202ENSMUST00000109477 Map4P27546 1125 aaKnown RBP30.59■■■□□ 2.49
Ccdc88a-202ENSMUST00000109477 Pkd2O35245 966 aa30.58■■■□□ 2.49
Ccdc88a-202ENSMUST00000109477 Gli2Q0VGT2 1544 aa30.57■■■□□ 2.48
Ccdc88a-202ENSMUST00000109477 Kif3bQ61771 747 aa30.57■■■□□ 2.48
Ccdc88a-202ENSMUST00000109477 Naip6Q9JIB6 1403 aa30.57■■■□□ 2.48
Ccdc88a-202ENSMUST00000109477 Trpm1Q2TV84 1622 aa30.53■■■□□ 2.48
Ccdc88a-202ENSMUST00000109477 Usp54Q8BL06 1588 aaKnown RBP30.53■■■□□ 2.48
Ccdc88a-202ENSMUST00000109477 Cfap65Q3V0B4 1847 aa30.52■■■□□ 2.48
Ccdc88a-202ENSMUST00000109477 Zbtb7cQ8VCZ7 619 aa30.52■■■□□ 2.48
Ccdc88a-202ENSMUST00000109477 Alpk3Q924C5 1678 aa30.51■■■□□ 2.47
Ccdc88a-202ENSMUST00000109477 Kif1bQ60575 1816 aaKnown RBP30.5■■■□□ 2.47
Ccdc88a-202ENSMUST00000109477 Plch2A2AP18 1501 aa30.5■■■□□ 2.47
Ccdc88a-202ENSMUST00000109477 Asxl1P59598 1514 aa30.5■■■□□ 2.47
Ccdc88a-202ENSMUST00000109477 Topbp1Q6ZQF0 1515 aa30.5■■■□□ 2.47
Ccdc88a-202ENSMUST00000109477 Trak1Q6PD31 939 aa30.49■■■□□ 2.47
Ccdc88a-202ENSMUST00000109477 Rprd2Q6NXI6 1469 aaKnown RBP30.49■■■□□ 2.47
Ccdc88a-202ENSMUST00000109477 PtprgQ05909 1442 aa30.49■■■□□ 2.47
Ccdc88a-202ENSMUST00000109477 Adamtsl3G3UXC7 1706 aa30.48■■■□□ 2.47
Ccdc88a-202ENSMUST00000109477 Pik3c2gO70167 1506 aa30.47■■■□□ 2.47
Ccdc88a-202ENSMUST00000109477 ShprhQ7TPQ3 1674 aa30.47■■■□□ 2.47
Ccdc88a-202ENSMUST00000109477 Uggt2E9Q4X2 1504 aa30.45■■■□□ 2.47
Ccdc88a-202ENSMUST00000109477 Naip5Q9R016 1403 aa30.45■■■□□ 2.46
Ccdc88a-202ENSMUST00000109477 Pde4cQ3UEI1 686 aa30.44■■■□□ 2.46
Ccdc88a-202ENSMUST00000109477 Usp47Q8BY87 1376 aa30.43■■■□□ 2.46
Ccdc88a-202ENSMUST00000109477 Myo5cE9Q1F5 1742 aa30.42■■■□□ 2.46
Ccdc88a-202ENSMUST00000109477 Dhx9O70133 1380 aaKnown RBP30.4■■■□□ 2.46
Ccdc88a-202ENSMUST00000109477 Robo2Q7TPD3 1470 aa30.39■■■□□ 2.46
Ccdc88a-202ENSMUST00000109477 Camsap2Q8C1B1 1461 aa30.39■■■□□ 2.46
Ccdc88a-202ENSMUST00000109477 Cd109Q8R422 1442 aa30.37■■■□□ 2.45
Ccdc88a-202ENSMUST00000109477 Hnrnpul2Q00PI9 745 aaKnown RBP30.37■■■□□ 2.45
Ccdc88a-202ENSMUST00000109477 DroshaQ5HZJ0 1373 aaKnown RBP30.37■■■□□ 2.45
Ccdc88a-202ENSMUST00000109477 Afap1Q80YS6 731 aa30.36■■■□□ 2.45
Ccdc88a-202ENSMUST00000109477 Aebp2Q9Z248 504 aaKnown RBP30.33■■■□□ 2.45
Ccdc88a-202ENSMUST00000109477 Wdr66E9Q743 1299 aa30.3■■■□□ 2.44
Ccdc88a-202ENSMUST00000109477 MlecQ6ZQI3 291 aaKnown RBP30.27■■■□□ 2.44
Ccdc88a-202ENSMUST00000109477 Nsd2Q8BVE8 1365 aa30.27■■■□□ 2.44
Ccdc88a-202ENSMUST00000109477 Atp7aQ64430 1491 aa30.27■■■□□ 2.44
Ccdc88a-202ENSMUST00000109477 Myom3A2ABU4 1439 aa30.26■■■□□ 2.44
Ccdc88a-202ENSMUST00000109477 Safb2Q80YR5 991 aaKnown RBP30.25■■■□□ 2.43
Ccdc88a-202ENSMUST00000109477 Rsph4aQ8BYM7 716 aa30.25■■■□□ 2.43
Ccdc88a-202ENSMUST00000109477 Dot1lQ6XZL8 1540 aa30.25■■■□□ 2.43
Ccdc88a-202ENSMUST00000109477 Supt5hO55201 1082 aaKnown RBP30.25■■■□□ 2.43
Ccdc88a-202ENSMUST00000109477 Abca6Q8K441 1624 aa30.24■■■□□ 2.43
Ccdc88a-202ENSMUST00000109477 Prex1Q69ZK0 1650 aa30.22■■■□□ 2.43
Ccdc88a-202ENSMUST00000109477 Ylpm1Q9R0I7 1386 aaKnown RBP30.2■■■□□ 2.42
Ccdc88a-202ENSMUST00000109477 CltcQ68FD5 1675 aaKnown RBP30.17■■■□□ 2.42
Ccdc88a-202ENSMUST00000109477 Rock1P70335 1354 aa30.16■■■□□ 2.42
Ccdc88a-202ENSMUST00000109477 Myom2Q14BI5 1463 aa30.16■■■□□ 2.42
Ccdc88a-202ENSMUST00000109477 Tmem131lQ3U3D7 1597 aa30.15■■■□□ 2.42
Ccdc88a-202ENSMUST00000109477 Talpid3E9PV87 1520 aa30.15■■■□□ 2.42
Ccdc88a-202ENSMUST00000109477 Ttc21bQ0HA38 1315 aa30.15■■■□□ 2.42
Ccdc88a-202ENSMUST00000109477 Ppargc1bQ8VHJ7 1014 aa30.14■■■□□ 2.42
Ccdc88a-202ENSMUST00000109477 Ppip5k1A2ARP1 1436 aa30.14■■■□□ 2.41
Ccdc88a-202ENSMUST00000109477 ClspnQ80YR7 1315 aa30.14■■■□□ 2.41
Ccdc88a-202ENSMUST00000109477 Pcgf6Q99NA9 353 aa30.13■■■□□ 2.41
Ccdc88a-202ENSMUST00000109477 Hdac5Q9Z2V6 1113 aa30.13■■■□□ 2.41
Ccdc88a-202ENSMUST00000109477 AnkarA2RT91 1465 aa30.12■■■□□ 2.41
Ccdc88a-202ENSMUST00000109477 Tarbp1E9Q368 1579 aa30.12■■■□□ 2.41
Ccdc88a-202ENSMUST00000109477 RictorQ6QI06 1708 aa30.12■■■□□ 2.41
Ccdc88a-202ENSMUST00000109477 Rgl3Q3UYI5 709 aa30.11■■■□□ 2.41
Ccdc88a-202ENSMUST00000109477 Adamts7Q68SA9 1657 aa30.11■■■□□ 2.41
Ccdc88a-202ENSMUST00000109477 Sall2Q9QX96 1004 aa30.1■■■□□ 2.41
Ccdc88a-202ENSMUST00000109477 Arhgap23Q69ZH9 1483 aa30.1■■■□□ 2.41
Ccdc88a-202ENSMUST00000109477 Edc4Q3UJB9 1406 aaKnown RBP30.07■■■□□ 2.4
Ccdc88a-202ENSMUST00000109477 Neurod1Q60867 357 aa30.07■■■□□ 2.4
Ccdc88a-202ENSMUST00000109477 Knl1Q66JQ7 1612 aa30.06■■■□□ 2.4
Ccdc88a-202ENSMUST00000109477 Hfm1D3Z4R1 1434 aa30.04■■■□□ 2.4
Ccdc88a-202ENSMUST00000109477 Mbd5B1AYB6 1498 aa30.04■■■□□ 2.4
Ccdc88a-202ENSMUST00000109477 Gm13697A2AK42 830 aa30.02■■■□□ 2.4
Ccdc88a-202ENSMUST00000109477 MyclP10166 368 aa30.02■■■□□ 2.4
Ccdc88a-202ENSMUST00000109477 Iqgap3F8VQ29 1632 aa30.01■■■□□ 2.39
Ccdc88a-202ENSMUST00000109477 Iqgap1Q9JKF1 1657 aaKnown RBP30.01■■■□□ 2.39
Ccdc88a-202ENSMUST00000109477 Washc2Q6PGL7 1334 aa29.99■■■□□ 2.39
Ccdc88a-202ENSMUST00000109477 Med14A2ABV5 1459 aaKnown RBP29.98■■■□□ 2.39
Ccdc88a-202ENSMUST00000109477 Akap12Q9WTQ5 1684 aa29.97■■■□□ 2.39
Ccdc88a-202ENSMUST00000109477 Erich6D3Z6S9 713 aa29.94■■■□□ 2.38
Ccdc88a-202ENSMUST00000109477 Prdm2A2A7B5 1709 aaKnown RBP29.94■■■□□ 2.38
Ccdc88a-202ENSMUST00000109477 Dip2bQ3UH60 1574 aa29.94■■■□□ 2.38
Ccdc88a-202ENSMUST00000109477 Mug2P28666 1451 aa29.93■■■□□ 2.38
Ccdc88a-202ENSMUST00000109477 Cpsf1Q9EPU4 1441 aaKnown RBP29.92■■■□□ 2.38
Ccdc88a-202ENSMUST00000109477 PtprmP28828 1452 aa29.91■■■□□ 2.38
Ccdc88a-202ENSMUST00000109477 Abca8aQ8K442 1620 aa29.89■■■□□ 2.38
Ccdc88a-202ENSMUST00000109477 Polr3aB2RXC6 1390 aa29.89■■■□□ 2.38
Ccdc88a-202ENSMUST00000109477 Ino80Q6ZPV2 1559 aa29.89■■■□□ 2.38
Ccdc88a-202ENSMUST00000109477 Tecpr2Q3UH45 1423 aa29.89■■■□□ 2.37
Ccdc88a-202ENSMUST00000109477 4930407I10RikD3Z5T8 1512 aa29.88■■■□□ 2.37
Ccdc88a-202ENSMUST00000109477 ErbinQ80TH2 1402 aa29.87■■■□□ 2.37
Ccdc88a-202ENSMUST00000109477 Abcc6Q9R1S7 1498 aa29.86■■■□□ 2.37
Ccdc88a-202ENSMUST00000109477 Brwd3A2AHJ4 1799 aa29.86■■■□□ 2.37
Ccdc88a-202ENSMUST00000109477 Cdk13Q69ZA1 1511 aaKnown RBP29.85■■■□□ 2.37
Ccdc88a-202ENSMUST00000109477 Grwd1Q810D6 446 aaKnown RBP29.85■■■□□ 2.37
Ccdc88a-202ENSMUST00000109477 Dapk1Q80YE7 1442 aa29.85■■■□□ 2.37
Ccdc88a-202ENSMUST00000109477 Mroh3A0A1D5RM54 893 aa29.85■■■□□ 2.37
Retrieved 100 of 22,080 RNA–protein pairs in 7.2 ms