RNA–Protein interactions for RNA: ENSMUST00000056508.11

Clcn3-202, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS P4 TSL 1 (best) BASIC

Gene Clcn3, Length 5,684 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-202ENSMUST00000056508 VgfQ0VGU4 617 aa11.35□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Tma7Q8K003 64 aaKnown RBP11.34□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Gm10354K7N6A0 256 aa11.34□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Lman1Q9D0F3 517 aa11.34□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Tex13c2A0A0G2JGA3 530 aa11.34□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Pnmal2G3X9N3 661 aa11.34□□□□□ -0.59
Clcn3-202ENSMUST00000056508 Anks4bQ8K3X6 423 aa11.33□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Cc2d1aQ8K1A6 943 aa11.33□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Gsdma3Q5Y4Y6 464 aa11.32□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Gm45140A0A0N4SUM8 220 aa11.32□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Speer4eK7N6S8 255 aa11.32□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Map7d2A2AG50 781 aa11.32□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Mrs2Q5NCE8 434 aa11.32□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Flt3Q00342 1000 aa11.32□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Ccdc97Q9DBT3 340 aa11.31□□□□□ -0.6
Clcn3-202ENSMUST00000056508 ThrspQ62264 150 aa11.3□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Tpd52l2Q9CYZ2 220 aaKnown RBP11.3□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Sfi1Q3UZY0 1216 aaKnown RBP11.3□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Map4k4P97820 1233 aaKnown RBP11.29□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Spata17Q9D552 379 aa11.29□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Gigyf1Q99MR1 1044 aaKnown RBP11.29□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Fam43bA2AM80 330 aa11.29□□□□□ -0.6
Clcn3-202ENSMUST00000056508 G430095P16RikE9Q913 147 aa11.29□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Nap1l1P28656 391 aaKnown RBP11.29□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Zranb2Q9R020 330 aaKnown RBP11.28□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Capn10Q9ESK3 666 aa11.28□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Ftsj3Q9DBE9 838 aaKnown RBP11.27□□□□□ -0.6
Clcn3-202ENSMUST00000056508 Ferd3lQ923Z4 168 aa11.27□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Trim63Q38HM4 350 aa11.27□□□□□ -0.61
Clcn3-202ENSMUST00000056508 4930519G04RikQ9CPT7 205 aa11.27□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Galntl5Q9D4M9 431 aa11.27□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Rgl2Q61193 778 aa11.26□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Kif11Q6P9P6 1052 aa11.26□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Cc2d1bQ8BRN9 848 aa11.25□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Ivns1abpQ920Q8 642 aa11.25□□□□□ -0.61
Clcn3-202ENSMUST00000056508 March6Q6ZQ89 909 aa11.25□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Ttll12Q3UDE2 639 aa11.24□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Casc1Q6TDU8 730 aa11.24□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Tmed8Q3UHI4 326 aa11.24□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Znhit6Q3UFB2 460 aaKnown RBP11.23□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Slc4a7Q8BTY2 1034 aa11.23□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Tmc1Q8R4P5 757 aa11.23□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Ppp1r18Q8BQ30 594 aa11.23□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Tagap1P0CAX8 505 aa11.22□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Gm10093D3YYI8 482 aa11.22□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Hdac1O09106 482 aaKnown RBP11.22□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Srpk2O54781 681 aaKnown RBP11.22□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Dixdc1Q80Y83 711 aa11.22□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Suds3Q8BR65 328 aa11.21□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Sf3a1Q8K4Z5 791 aaKnown RBP11.21□□□□□ -0.61
Clcn3-202ENSMUST00000056508 Hsp90ab1P11499 724 aaKnown RBP11.21□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Kdm2bQ6P1G2 1309 aa11.21□□□□□ -0.62
Clcn3-202ENSMUST00000056508 ClspnQ80YR7 1315 aa11.2□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Atf5O70191 283 aa11.2□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Mkrn3Q60764 544 aa11.2□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Commd10Q8JZY2 202 aa11.2□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Abl2Q4JIM5 1182 aa11.2□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Ddx11Q6AXC6 880 aa11.19□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Fam117aQ7TNF9 451 aa11.19□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Ccer1Q9CQL2 403 aa11.19□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Krt18P05784 423 aa11.19□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Kcna1P16388 495 aa11.18□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Homer1Q9Z2Y3 366 aa11.18□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Tcerg1Q8CGF7 1100 aaKnown RBP11.17□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Chmp4bQ9D8B3 224 aaKnown RBP11.17□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Rnf216P58283 853 aa11.16□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Psme1P97371 249 aa11.16□□□□□ -0.62
Clcn3-202ENSMUST00000056508 SlmapQ3URD3 845 aa11.16□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Ppme1Q8BVQ5 386 aa11.16□□□□□ -0.62
Clcn3-202ENSMUST00000056508 ChmQ9QXG2 665 aa11.16□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Rnf187Q8BFX1 236 aa11.15□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Znf131Q8K3J5 619 aa11.15□□□□□ -0.62
Clcn3-202ENSMUST00000056508 GorabQ8BRM2 368 aa11.15□□□□□ -0.62
Clcn3-202ENSMUST00000056508 Ccser2Q3UHI0 833 aa11.15□□□□□ -0.63
Clcn3-202ENSMUST00000056508 U2surpQ6NV83 1029 aaKnown RBP11.14□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Tnnt1O88346 262 aa11.14□□□□□ -0.63
Clcn3-202ENSMUST00000056508 CenphQ9QYM8 241 aa11.14□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Bank1Q80VH0 783 aa11.14□□□□□ -0.63
Clcn3-202ENSMUST00000056508 4933428M09RikQ9D3X3 192 aa11.14□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Dhx16G3X8X0 1044 aaKnown RBP11.13□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Tex19.1Q99MV2 351 aa11.13□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Rrp9Q91WM3 475 aaKnown RBP11.13□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Tulp1Q9Z273 543 aa11.12□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Skor2A7M7C7 1008 aa11.12□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Armc9Q9D2I5 817 aa11.12□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Mrgprb8Q7TN51 330 aa11.12□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Ccer2J3QPU5 274 aa11.12□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Atp6v1e2Q9D593 226 aa11.11□□□□□ -0.63
Clcn3-202ENSMUST00000056508 StimateQ3UF25 288 aa11.11□□□□□ -0.63
Clcn3-202ENSMUST00000056508 PrimpolQ6P1E7 537 aa11.11□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Mrps9Q9D7N3 390 aaKnown RBP11.11□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Gm42641I6L9G2 585 aa11.11□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Inf2Q0GNC1 1273 aa11.11□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Slc4a10Q5DTL9 1118 aa11.11□□□□□ -0.63
Clcn3-202ENSMUST00000056508 AtripQ8BMG1 785 aa11.11□□□□□ -0.63
Clcn3-202ENSMUST00000056508 AampJ3QN89 436 aa11.1□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Krt20Q9D312 431 aa11.1□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Pex14Q9R0A0 376 aa11.1□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Irf5P56477 497 aa11.1□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Dnajc2P54103 621 aaKnown RBP11.1□□□□□ -0.63
Retrieved 100 of 22,080 RNA–protein pairs in 43.7 ms