RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 DACT1Q9NYF0 836 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 CCDC39Q9UFE4 941 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 CDY2AQ9Y6F7 541 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 TRIP11Q15643 1979 aa16.69■□□□□ 0.26
TRIM28-207ENST00000597136 IGKV6-21A0A0C4DH24 114 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 E9PMD0 336 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 TRAK2O60296 914 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 RARRES1P49788 294 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 MRPS6P82932 125 aaKnown RBP16.68■□□□□ 0.26
TRIM28-207ENST00000597136 SHHQ15465 462 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 KLHL40Q2TBA0 621 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 ZNF365Q70YC5 407 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 RASSF8Q8NHQ8 419 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 LRRC15Q8TF66 581 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 CALML4Q96GE6 196 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 DHX33Q9H6R0 707 aaKnown RBP16.68■□□□□ 0.26
TRIM28-207ENST00000597136 POLD4Q9HCU8 107 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 KDM3AQ9Y4C1 1321 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 XRCC6P12956 609 aaKnown RBP eCLIP16.68■□□□□ 0.26
TRIM28-207ENST00000597136 PLCG1P19174 1290 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 BMP8BP34820 402 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 PPIGQ13427 754 aaKnown RBP eCLIP16.68■□□□□ 0.263e-8■□□□□ 10.8
TRIM28-207ENST00000597136 E2F4Q16254 413 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 TMEM119Q4V9L6 283 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 TMEM240Q5SV17 173 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 RRAGBQ5VZM2 374 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 RSPH3Q86UC2 560 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 IQUBQ8NA54 791 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 CDK5RAP3Q96JB5 506 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 PYM1Q9BRP8 204 aaKnown RBP16.68■□□□□ 0.26
TRIM28-207ENST00000597136 XPNPEP1Q9NQW7 623 aa16.68■□□□□ 0.26
TRIM28-207ENST00000597136 POLGP54098 1239 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-207ENST00000597136 KIZQ2M2Z5 673 aa16.67■□□□□ 0.26
TRIM28-207ENST00000597136 LONRF3Q496Y0 759 aa16.67■□□□□ 0.26
TRIM28-207ENST00000597136 KSR1Q8IVT5 923 aa16.67■□□□□ 0.26
TRIM28-207ENST00000597136 TMEM143Q96AN5 459 aa16.67■□□□□ 0.26
TRIM28-207ENST00000597136 DHX58Q96C10 678 aa16.67■□□□□ 0.26
TRIM28-207ENST00000597136 CELF4Q9BZC1 486 aaKnown RBP16.67■□□□□ 0.26
TRIM28-207ENST00000597136 NT5C3AQ9H0P0 336 aa16.67■□□□□ 0.26
TRIM28-207ENST00000597136 DBR1Q9UK59 544 aaKnown RBP16.67■□□□□ 0.26
TRIM28-207ENST00000597136 AKT3Q9Y243 479 aa16.67■□□□□ 0.26
TRIM28-207ENST00000597136 GINS2Q9Y248 185 aa16.67■□□□□ 0.26
TRIM28-207ENST00000597136 ACTN4O43707 911 aaKnown RBP16.66■□□□□ 0.26
TRIM28-207ENST00000597136 KINO60870 393 aaKnown RBP16.66■□□□□ 0.26
TRIM28-207ENST00000597136 CAND2O75155 1236 aa16.66■□□□□ 0.26
TRIM28-207ENST00000597136 GPR32O75388 356 aa16.66■□□□□ 0.26
TRIM28-207ENST00000597136 MUTP22033 750 aa16.66■□□□□ 0.26
TRIM28-207ENST00000597136 STAT6P42226 847 aa16.66■□□□□ 0.26
TRIM28-207ENST00000597136 NLRP11P59045 1033 aaKnown RBP16.66■□□□□ 0.26
TRIM28-207ENST00000597136 NAALADL2Q58DX5 795 aa16.66■□□□□ 0.26
TRIM28-207ENST00000597136 IER5Q5VY09 327 aa16.66■□□□□ 0.26
TRIM28-207ENST00000597136 OTOP2Q7RTS6 562 aa16.66■□□□□ 0.26
TRIM28-207ENST00000597136 NME8Q8N427 588 aa16.66■□□□□ 0.26
TRIM28-207ENST00000597136 BHMT2Q9H2M3 363 aa16.66■□□□□ 0.26
TRIM28-207ENST00000597136 SUCLA2Q9P2R7 463 aaPredicted RBP16.66■□□□□ 0.26
TRIM28-207ENST00000597136 USP25Q9UHP3 1055 aa16.66■□□□□ 0.26
TRIM28-207ENST00000597136 SZT2Q5T011 3432 aa16.66■□□□□ 0.26
TRIM28-207ENST00000597136 USO1O60763 962 aaKnown RBP16.65■□□□□ 0.26
TRIM28-207ENST00000597136 CXCL10P02778 98 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 SLFN14P0C7P3 912 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 GHRP10912 638 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 TMOD1P28289 359 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 RFC2P35250 354 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 RFC5P40937 340 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 LPIN1Q14693 890 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 EMC2Q15006 297 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 FBXO47Q5MNV8 452 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 KRBA2Q6ZNG9 492 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 MAEAQ7L5Y9 396 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 RPUSD2Q8IZ73 545 aaKnown RBP16.65■□□□□ 0.26
TRIM28-207ENST00000597136 TMEM40Q8WWA1 233 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 TIGD1Q96MW7 591 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 ADAMTS10Q9H324 1103 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 AGO3Q9H9G7 860 aaKnown RBP16.65■□□□□ 0.26
TRIM28-207ENST00000597136 SERTAD1Q9UHV2 236 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 TRPV2Q9Y5S1 764 aa16.65■□□□□ 0.26
TRIM28-207ENST00000597136 EYA4O95677 639 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 FGBP02675 491 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 PADI6Q6TGC4 694 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 RHPN2Q8IUC4 686 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 KCTD17Q8N5Z5 321 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 DBF4BQ8NFT6 615 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 PRPF31Q8WWY3 499 aaKnown RBP16.64■□□□□ 0.25
TRIM28-207ENST00000597136 SLC7A3Q8WY07 619 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 OSMRQ99650 979 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 CUEDC2Q9H467 287 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 GPRC5CQ9NQ84 441 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 BLOC1S4Q9NUP1 217 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 CXXC1Q9P0U4 656 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-207ENST00000597136 STK17AQ9UEE5 414 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 DNM3Q9UQ16 869 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 ARHGEF35A5YM69 484 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 CSDE1O75534 798 aaKnown RBP16.64■□□□□ 0.25
TRIM28-207ENST00000597136 GPC3P51654 580 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 PLEKHG4Q58EX7 1191 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 CEP57L1Q8IYX8 460 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 CNNM3Q8NE01 707 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 CCDC43Q96MW1 224 aaKnown RBP16.64■□□□□ 0.25
TRIM28-207ENST00000597136 MAP7D2Q96T17 732 aa16.64■□□□□ 0.25
TRIM28-207ENST00000597136 MTRQ99707 1265 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms