RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 ADGRA3Q8IWK6 1321 aa18.12■□□□□ 0.49
TRIM28-206ENST00000595974 DENND3A2RUS2 1198 aa18.11■□□□□ 0.49
TRIM28-206ENST00000595974 DARSP14868 501 aaKnown RBP18.11■□□□□ 0.49
TRIM28-206ENST00000595974 IGFBP4P22692 258 aa18.11■□□□□ 0.49
TRIM28-206ENST00000595974 XKR9Q5GH70 373 aa18.11■□□□□ 0.49
TRIM28-206ENST00000595974 MCTP1Q6DN14 999 aa18.11■□□□□ 0.49
TRIM28-206ENST00000595974 ZNF410Q86VK4 478 aa18.11■□□□□ 0.49
TRIM28-206ENST00000595974 SUCLA2Q9P2R7 463 aaPredicted RBP18.11■□□□□ 0.49
TRIM28-206ENST00000595974 UNC80Q8N2C7 3258 aa18.11■□□□□ 0.49
TRIM28-206ENST00000595974 GTPBP6O43824 516 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-206ENST00000595974 MGEA5O60502 916 aa18.1■□□□□ 0.49
TRIM28-206ENST00000595974 POU3F3P20264 500 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-206ENST00000595974 SARSP49591 514 aaKnown RBP18.1■□□□□ 0.49
TRIM28-206ENST00000595974 TOB1P50616 345 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-206ENST00000595974 NBR1Q14596 966 aa18.1■□□□□ 0.49
TRIM28-206ENST00000595974 EMC2Q15006 297 aa18.1■□□□□ 0.49
TRIM28-206ENST00000595974 CRIPAKQ8N1N5 446 aa18.1■□□□□ 0.49
TRIM28-206ENST00000595974 ZNF579Q8NAF0 562 aaKnown RBP18.1■□□□□ 0.49
TRIM28-206ENST00000595974 ERMNQ8TAM6 284 aa18.1■□□□□ 0.49
TRIM28-206ENST00000595974 CCDC43Q96MW1 224 aaKnown RBP18.1■□□□□ 0.49
TRIM28-206ENST00000595974 ADAM2Q99965 735 aa18.1■□□□□ 0.49
TRIM28-206ENST00000595974 GCOM2Q9BZD3 368 aaPredicted RBP18.1■□□□□ 0.49
TRIM28-206ENST00000595974 TUFT1Q9NNX1 390 aa18.1■□□□□ 0.49
TRIM28-206ENST00000595974 RGS18Q9NS28 235 aa18.1■□□□□ 0.49
TRIM28-206ENST00000595974 ANKEF1Q9NU02 776 aa18.1■□□□□ 0.49
TRIM28-206ENST00000595974 RFXAPO00287 272 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 LAD1O00515 517 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 DGKIO75912 1065 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 TECP42680 631 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 FXR2P51116 673 aaKnown RBP eCLIP18.09■□□□□ 0.498e-17■■■□□ 18.5
TRIM28-206ENST00000595974 GRB10Q13322 594 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 DSC3Q14574 896 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 RILPL1Q5EBL4 403 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 HAUS3Q68CZ6 603 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 SLC24A5Q71RS6 500 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 RHPN2Q8IUC4 686 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 FIBCD1Q8N539 461 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 C4orf32Q8N8J7 132 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 FBXO22Q8NEZ5 403 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 GDPD5Q8WTR4 605 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 TCP11Q8WWU5 503 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 PSPC1Q8WXF1 523 aaKnown RBP18.09■□□□□ 0.49
TRIM28-206ENST00000595974 ZNF689Q96CS4 500 aaPredicted RBP18.09■□□□□ 0.49
TRIM28-206ENST00000595974 ZNF668Q96K58 619 aaPredicted RBP18.09■□□□□ 0.49
TRIM28-206ENST00000595974 C17orf80Q9BSJ5 609 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 INO80BQ9C086 356 aaPredicted RBP18.09■□□□□ 0.49
TRIM28-206ENST00000595974 MTUS1Q9ULD2 1270 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 LRFN2Q9ULH4 789 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 RWDD3Q9Y3V2 267 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 PCDHB6Q9Y5E3 794 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 COL4A3BPQ9Y5P4 624 aa18.09■□□□□ 0.49
TRIM28-206ENST00000595974 A0A087WZ62 844 aa18.08■□□□□ 0.48
TRIM28-206ENST00000595974 C9IYK1 514 aa18.08■□□□□ 0.48
TRIM28-206ENST00000595974 ZBTB39O15060 712 aa18.08■□□□□ 0.48
TRIM28-206ENST00000595974 SPATA31C1P0DKV0 1188 aa18.08■□□□□ 0.48
TRIM28-206ENST00000595974 XRCC6P12956 609 aaKnown RBP eCLIP18.08■□□□□ 0.48
TRIM28-206ENST00000595974 SFPQP23246 707 aaKnown RBP eCLIP18.08■□□□□ 0.48
TRIM28-206ENST00000595974 RARRES1P49788 294 aa18.08■□□□□ 0.48
TRIM28-206ENST00000595974 PTGDRQ13258 359 aa18.08■□□□□ 0.48
TRIM28-206ENST00000595974 LARP1BQ659C4 914 aaKnown RBP18.08■□□□□ 0.48
TRIM28-206ENST00000595974 CMTR2Q8IYT2 770 aaKnown RBP18.08■□□□□ 0.48
TRIM28-206ENST00000595974 SLC17A8Q8NDX2 589 aa18.08■□□□□ 0.48
TRIM28-206ENST00000595974 NLRP4Q96MN2 994 aa18.08■□□□□ 0.48
TRIM28-206ENST00000595974 MTRQ99707 1265 aa18.08■□□□□ 0.48
TRIM28-206ENST00000595974 FDXACB1Q9BRP7 624 aaPredicted RBP18.08■□□□□ 0.48
TRIM28-206ENST00000595974 POLR3CQ9BUI4 534 aaPredicted RBP18.08■□□□□ 0.48
TRIM28-206ENST00000595974 RAB34Q9BZG1 259 aa18.08■□□□□ 0.48
TRIM28-206ENST00000595974 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.08■□□□□ 0.48
TRIM28-206ENST00000595974 MTCH2Q9Y6C9 303 aa18.08■□□□□ 0.48
TRIM28-206ENST00000595974 LPXNO60711 386 aa18.07■□□□□ 0.48
TRIM28-206ENST00000595974 DGAT1O75907 488 aa18.07■□□□□ 0.48
TRIM28-206ENST00000595974 ZSCAN20P17040 1043 aaPredicted RBP18.07■□□□□ 0.48
TRIM28-206ENST00000595974 MUTP22033 750 aa18.07■□□□□ 0.48
TRIM28-206ENST00000595974 RPA1P27694 616 aa18.07■□□□□ 0.48
TRIM28-206ENST00000595974 PRPHP41219 470 aa18.07■□□□□ 0.48
TRIM28-206ENST00000595974 BTG3Q14201 252 aaPredicted RBP18.07■□□□□ 0.48
TRIM28-206ENST00000595974 EPC2Q52LR7 807 aa18.07■□□□□ 0.48
TRIM28-206ENST00000595974 CATSPER3Q86XQ3 398 aa18.07■□□□□ 0.48
TRIM28-206ENST00000595974 TMEM143Q96AN5 459 aa18.07■□□□□ 0.48
TRIM28-206ENST00000595974 ELAC1Q9H777 363 aaKnown RBP18.07■□□□□ 0.48
TRIM28-206ENST00000595974 ATP6V0A4Q9HBG4 840 aa18.07■□□□□ 0.48
TRIM28-206ENST00000595974 BMP2KQ9NSY1 1161 aaPredicted RBP18.07■□□□□ 0.48
TRIM28-206ENST00000595974 LMCD1Q9NZU5 365 aa18.07■□□□□ 0.48
TRIM28-206ENST00000595974 PCDHB7Q9Y5E2 793 aa18.07■□□□□ 0.48
TRIM28-206ENST00000595974 ATG2AQ2TAZ0 1938 aa18.07■□□□□ 0.48
TRIM28-206ENST00000595974 BRWD1Q9NSI6 2320 aa18.06■□□□□ 0.48
TRIM28-206ENST00000595974 REV3LO60673 3130 aa18.06■□□□□ 0.48
TRIM28-206ENST00000595974 ASAP2O43150 1006 aa18.06■□□□□ 0.48
TRIM28-206ENST00000595974 MED24O75448 989 aa18.06■□□□□ 0.48
TRIM28-206ENST00000595974 PDCP20941 246 aa18.06■□□□□ 0.48
TRIM28-206ENST00000595974 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.06■□□□□ 0.48
TRIM28-206ENST00000595974 TMEM192Q8IY95 271 aa18.06■□□□□ 0.48
TRIM28-206ENST00000595974 PIGOQ8TEQ8 1089 aa18.06■□□□□ 0.48
TRIM28-206ENST00000595974 PRPF31Q8WWY3 499 aaKnown RBP18.06■□□□□ 0.48
TRIM28-206ENST00000595974 CLP1Q92989 425 aaKnown RBP18.06■□□□□ 0.48
TRIM28-206ENST00000595974 XPNPEP1Q9NQW7 623 aa18.06■□□□□ 0.48
TRIM28-206ENST00000595974 TMEM161AQ9NX61 479 aa18.06■□□□□ 0.48
TRIM28-206ENST00000595974 DACT1Q9NYF0 836 aa18.06■□□□□ 0.48
TRIM28-206ENST00000595974 DBR1Q9UK59 544 aaKnown RBP18.06■□□□□ 0.48
TRIM28-206ENST00000595974 STK24Q9Y6E0 443 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms