RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 ARHGEF35A5YM69 484 aa14.46□□□□□ -0.09
CLK3-224ENST00000568605 GRXCR1A8MXD5 290 aa14.46□□□□□ -0.09
CLK3-224ENST00000568605 ASAP2O43150 1006 aa14.46□□□□□ -0.09
CLK3-224ENST00000568605 SLC26A4O43511 780 aa14.46□□□□□ -0.09
CLK3-224ENST00000568605 GPR32O75388 356 aa14.46□□□□□ -0.09
CLK3-224ENST00000568605 GJB5O95377 273 aa14.46□□□□□ -0.09
CLK3-224ENST00000568605 EIF4BP23588 611 aaKnown RBP14.46□□□□□ -0.09
CLK3-224ENST00000568605 MKRN4PQ13434 485 aaPredicted RBP14.46□□□□□ -0.09
CLK3-224ENST00000568605 TFDP1Q14186 410 aa14.46□□□□□ -0.09
CLK3-224ENST00000568605 MXD4Q14582 209 aaPredicted RBP14.46□□□□□ -0.09
CLK3-224ENST00000568605 SF3A1Q15459 793 aaKnown RBP14.46□□□□□ -0.09
CLK3-224ENST00000568605 PPP2R2DQ66LE6 453 aa14.46□□□□□ -0.09
CLK3-224ENST00000568605 KCTD17Q8N5Z5 321 aa14.46□□□□□ -0.09
CLK3-224ENST00000568605 DEFB123Q8N688 67 aa14.46□□□□□ -0.09
CLK3-224ENST00000568605 PIGOQ8TEQ8 1089 aa14.46□□□□□ -0.09
CLK3-224ENST00000568605 NLRP4Q96MN2 994 aa14.46□□□□□ -0.09
CLK3-224ENST00000568605 AGO3Q9H9G7 860 aaKnown RBP14.46□□□□□ -0.09
CLK3-224ENST00000568605 BMP2KQ9NSY1 1161 aaPredicted RBP14.46□□□□□ -0.09
CLK3-224ENST00000568605 ATG2AQ2TAZ0 1938 aa14.46□□□□□ -0.09
CLK3-224ENST00000568605 DENND3A2RUS2 1198 aa14.45□□□□□ -0.1
CLK3-224ENST00000568605 USO1O60763 962 aaKnown RBP14.45□□□□□ -0.1
CLK3-224ENST00000568605 PBX2P40425 430 aa14.45□□□□□ -0.1
CLK3-224ENST00000568605 PHKA2P46019 1235 aa14.45□□□□□ -0.1
CLK3-224ENST00000568605 DRP2Q13474 957 aa14.45□□□□□ -0.1
CLK3-224ENST00000568605 TCTN1Q2MV58 587 aa14.45□□□□□ -0.1
CLK3-224ENST00000568605 FAM228AQ86W67 206 aa14.45□□□□□ -0.1
CLK3-224ENST00000568605 RASSF8Q8NHQ8 419 aa14.45□□□□□ -0.1
CLK3-224ENST00000568605 TMEM40Q8WWA1 233 aa14.45□□□□□ -0.1
CLK3-224ENST00000568605 ZNF396Q96N95 335 aaPredicted RBP14.45□□□□□ -0.1
CLK3-224ENST00000568605 ERVK-5Q9HDB9 667 aa14.45□□□□□ -0.1
CLK3-224ENST00000568605 C1orf112Q9NSG2 853 aa14.45□□□□□ -0.1
CLK3-224ENST00000568605 ST3GAL5Q9UNP4 418 aa14.45□□□□□ -0.1
CLK3-224ENST00000568605 NOC2LQ9Y3T9 749 aaKnown RBP14.45□□□□□ -0.1
CLK3-224ENST00000568605 INSL6Q9Y581 213 aa14.45□□□□□ -0.1
CLK3-224ENST00000568605 PLXNA4Q9HCM2 1894 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 ZBTB39O15060 712 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 STAG3L1P0CL83 205 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 DARSP14868 501 aaKnown RBP14.44□□□□□ -0.1
CLK3-224ENST00000568605 ZSCAN20P17040 1043 aaPredicted RBP14.44□□□□□ -0.1
CLK3-224ENST00000568605 LONP1P36776 959 aaKnown RBP14.44□□□□□ -0.1
CLK3-224ENST00000568605 TXLNAP40222 546 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 UBA7P41226 1012 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 RABGGTBP53611 331 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.44□□□□□ -0.15e-12■■□□□ 14.3
CLK3-224ENST00000568605 ZNF579Q8NAF0 562 aaKnown RBP14.44□□□□□ -0.1
CLK3-224ENST00000568605 TMEM143Q96AN5 459 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 CALML4Q96GE6 196 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 RAD9AQ99638 391 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 OSBPL7Q9BZF2 842 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 TSPYL2Q9H2G4 693 aaPredicted RBP14.44□□□□□ -0.1
CLK3-224ENST00000568605 NKX2-4Q9H2Z4 354 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 ADAMTS10Q9H324 1103 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 ZNF576Q9H609 170 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 DDX19AQ9NUU7 478 aaKnown RBP14.44□□□□□ -0.1
CLK3-224ENST00000568605 LRFN2Q9ULH4 789 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 KIAA1024Q9UPX6 916 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 DNM3Q9UQ16 869 aa14.44□□□□□ -0.1
CLK3-224ENST00000568605 A0A087WZ62 844 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.43□□□□□ -0.1
CLK3-224ENST00000568605 PP2D1A8MPX8 630 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 UPP2O95045 317 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 F13A1P00488 732 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 CA3P07451 260 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 ZSCAN22P10073 491 aaPredicted RBP14.43□□□□□ -0.1
CLK3-224ENST00000568605 LAMTOR4Q0VGL1 99 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 STK38Q15208 465 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 PCBP1Q15365 356 aaKnown RBP eCLIP14.43□□□□□ -0.1
CLK3-224ENST00000568605 ZRSR1Q15695 479 aaKnown RBP14.43□□□□□ -0.1
CLK3-224ENST00000568605 FAM117BQ6P1L5 589 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 PADI6Q6TGC4 694 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 SRGAP1Q7Z6B7 1085 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 CABP7Q86V35 215 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 SPRYD3Q8NCJ5 442 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 PRPF31Q8WWY3 499 aaKnown RBP14.43□□□□□ -0.1
CLK3-224ENST00000568605 TOP1MTQ969P6 601 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 YME1L1Q96TA2 773 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 FDXACB1Q9BRP7 624 aaPredicted RBP14.43□□□□□ -0.1
CLK3-224ENST00000568605 BHMT2Q9H2M3 363 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 CDHR5Q9HBB8 845 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 XPNPEP1Q9NQW7 623 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 DACT1Q9NYF0 836 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 YBX2Q9Y2T7 364 aaKnown RBP14.43□□□□□ -0.1
CLK3-224ENST00000568605 MORC2Q9Y6X9 1032 aaPredicted RBP14.43□□□□□ -0.1
CLK3-224ENST00000568605 TRIP11Q15643 1979 aa14.43□□□□□ -0.1
CLK3-224ENST00000568605 PDCD11Q14690 1871 aaKnown RBP14.42□□□□□ -0.1
CLK3-224ENST00000568605 ERLIN2O94905 339 aa14.42□□□□□ -0.1
CLK3-224ENST00000568605 EYA4O95677 639 aa14.42□□□□□ -0.1
CLK3-224ENST00000568605 PPP2R5AQ15172 486 aa14.42□□□□□ -0.1
CLK3-224ENST00000568605 IL17AQ16552 155 aa14.42□□□□□ -0.1
CLK3-224ENST00000568605 HYIQ5T013 277 aa14.42□□□□□ -0.1
CLK3-224ENST00000568605 Q7L0L9 218 aa14.42□□□□□ -0.1
CLK3-224ENST00000568605 CATSPER4Q7RTX7 472 aa14.42□□□□□ -0.1
CLK3-224ENST00000568605 NPAS4Q8IUM7 802 aa14.42□□□□□ -0.1
CLK3-224ENST00000568605 RNF149Q8NC42 400 aa14.42□□□□□ -0.1
CLK3-224ENST00000568605 ZNF668Q96K58 619 aaPredicted RBP14.42□□□□□ -0.1
CLK3-224ENST00000568605 ADAM2Q99965 735 aa14.42□□□□□ -0.1
CLK3-224ENST00000568605 POLR3FQ9H1D9 316 aaPredicted RBP14.42□□□□□ -0.1
CLK3-224ENST00000568605 CLIC4Q9Y696 253 aa14.42□□□□□ -0.1
CLK3-224ENST00000568605 SZT2Q5T011 3432 aa14.42□□□□□ -0.1
CLK3-224ENST00000568605 ADGRA3Q8IWK6 1321 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms