RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 THSD7AQ9UPZ6 1657 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 ITGB4P16144 1822 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 DPPA5A6NC42 116 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 BCL9O00512 1426 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 LAD1O00515 517 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 DDX3XO00571 662 aaKnown RBP eCLIP15.54■□□□□ 0.089e-8■■□□□ 13.7
SDC1-201ENST00000254351 RPL21P46778 160 aaKnown RBP15.54■□□□□ 0.08
SDC1-201ENST00000254351 COPS2P61201 443 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 LACTBP83111 547 aaPredicted RBP15.54■□□□□ 0.08
SDC1-201ENST00000254351 C3orf20Q8ND61 904 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 SCFD1Q8WVM8 642 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 ALG3Q92685 438 aa15.54■□□□□ 0.08
SDC1-201ENST00000254351 USP15Q9Y4E8 981 aaPredicted RBP15.54■□□□□ 0.08
SDC1-201ENST00000254351 PVALEFA0A1B0GWK0 134 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 TCRBV7S2A1N4TA0A589 114 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 CCDC188H7C350 402 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 LINGO3P0C6S8 592 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 IFI16Q16666 785 aaKnown RBP15.53■□□□□ 0.08
SDC1-201ENST00000254351 KIAA1755Q5JYT7 1200 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 ZNF746Q6NUN9 644 aaPredicted RBP15.53■□□□□ 0.08
SDC1-201ENST00000254351 ARHGEF26Q96DR7 871 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 ACSBG1Q96GR2 724 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 NSRP1Q9H0G5 558 aaKnown RBP15.53■□□□□ 0.08
SDC1-201ENST00000254351 RAB17Q9H0T7 212 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 NUCKS1Q9H1E3 243 aaKnown RBP15.53■□□□□ 0.08
SDC1-201ENST00000254351 GCNT4Q9P109 453 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 ARMCX3Q9UH62 379 aaPredicted RBP15.53■□□□□ 0.08
SDC1-201ENST00000254351 COL1A1P02452 1464 aaPredicted RBP15.53■□□□□ 0.08
SDC1-201ENST00000254351 CETN3O15182 167 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 ATMINO43313 823 aaPredicted RBP15.53■□□□□ 0.08
SDC1-201ENST00000254351 PPFIA2O75334 1257 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 TARSP26639 723 aaKnown RBP15.53■□□□□ 0.08
SDC1-201ENST00000254351 PPP1R2P41236 205 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 GRM4Q14833 912 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 SLC30A10Q6XR72 485 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 TXNRD3Q86VQ6 643 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 CCDC105Q8IYK2 499 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 GPR101Q96P66 508 aaPredicted RBP15.53■□□□□ 0.08
SDC1-201ENST00000254351 MAGEF1Q9HAY2 307 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 AIPL1Q9NZN9 384 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 MYH4Q9Y623 1939 aa15.53■□□□□ 0.08
SDC1-201ENST00000254351 DOT1LQ8TEK3 1739 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 USP17L5A8MUK1 530 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 ASAP2O43150 1006 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 PON1P27169 355 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 GNA11P29992 359 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 ZNF268Q14587 947 aaPredicted RBP15.52■□□□□ 0.08
SDC1-201ENST00000254351 KRT35Q92764 455 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 CELF1Q92879 486 aaKnown RBP15.52■□□□□ 0.08
SDC1-201ENST00000254351 ARHGEF2Q92974 986 aaKnown RBP15.52■□□□□ 0.08
SDC1-201ENST00000254351 RIC8AQ9NPQ8 531 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 SH3GLB2Q9NR46 395 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 RPTORQ8N122 1335 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 POTEFA5A3E0 1075 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 POTEIP0CG38 1075 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 PDE6CP51160 858 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 RAD23BP54727 409 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 MXRA7P84157 204 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 PABPC4Q13310 644 aaKnown RBP eCLIP15.52■□□□□ 0.08
SDC1-201ENST00000254351 CNGA2Q16280 664 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 HP1BP3Q5SSJ5 553 aaPredicted RBP15.52■□□□□ 0.08
SDC1-201ENST00000254351 POTEGQ6S5H5 508 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 POTEEQ6S8J3 1075 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 CAPN12Q6ZSI9 719 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 EXOC3L1Q86VI1 746 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 LRRC47Q8N1G4 583 aaKnown RBP15.52■□□□□ 0.08
SDC1-201ENST00000254351 DNAJC19Q96DA6 116 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 FAM118BQ9BPY3 351 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 THAP2Q9H0W7 228 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 SLITRK6Q9H5Y7 841 aa15.52■□□□□ 0.08
SDC1-201ENST00000254351 NUP188Q5SRE5 1749 aa15.52■□□□□ 0.07
SDC1-201ENST00000254351 GOLGA6L10A0A0M3HER8 536 aa15.52■□□□□ 0.07
SDC1-201ENST00000254351 SRRM3A6NNA2 597 aaPredicted RBP15.52■□□□□ 0.07
SDC1-201ENST00000254351 SUN1O94901 812 aa15.52■□□□□ 0.07
SDC1-201ENST00000254351 PRUNE1Q86TP1 453 aa15.52■□□□□ 0.07
SDC1-201ENST00000254351 BTBD6Q96KE9 485 aa15.52■□□□□ 0.07
SDC1-201ENST00000254351 MXD3Q9BW11 206 aa15.52■□□□□ 0.07
SDC1-201ENST00000254351 GNAT1P11488 350 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 XRCC5P13010 732 aaKnown RBP15.51■□□□□ 0.07
SDC1-201ENST00000254351 SLC16A2P36021 539 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 EIF3BP55884 814 aaKnown RBP15.51■□□□□ 0.07
SDC1-201ENST00000254351 CYP4A11Q02928 519 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 KLRC3Q07444 240 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 ITIH4Q14624 930 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 CDCA2Q69YH5 1023 aaPredicted RBP15.51■□□□□ 0.07
SDC1-201ENST00000254351 VPS36Q86VN1 386 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 VSIG1Q86XK7 387 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 SPOCK2Q92563 424 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 P3H4Q92791 437 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 NAF1Q96HR8 494 aaKnown RBP15.51■□□□□ 0.07
SDC1-201ENST00000254351 SH3GL3Q99963 347 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 ZDHHC18Q9NUE0 388 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 IRAK4Q9NWZ3 460 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 HAO1Q9UJM8 370 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 DUOX1Q9NRD9 1551 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 ATP4AP20648 1035 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 CCND1P24385 295 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 AUHQ13825 339 aaKnown RBP15.51■□□□□ 0.07
SDC1-201ENST00000254351 PLS1Q14651 629 aa15.51■□□□□ 0.07
SDC1-201ENST00000254351 ZDHHC24Q6UX98 284 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms