RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 LRRC71Q8N4P6 559 aa14.52□□□□□ -0.09
CLK3-224ENST00000568605 DBF4BQ8NFT6 615 aa14.52□□□□□ -0.09
CLK3-224ENST00000568605 PHOSPHO2Q8TCD6 241 aa14.52□□□□□ -0.09
CLK3-224ENST00000568605 VWCEQ96DN2 955 aa14.52□□□□□ -0.09
CLK3-224ENST00000568605 ZBTB10Q96DT7 871 aa14.52□□□□□ -0.09
CLK3-224ENST00000568605 LRCH3Q96II8 777 aa14.52□□□□□ -0.09
CLK3-224ENST00000568605 CEP170P1Q96L14 293 aa14.52□□□□□ -0.09
CLK3-224ENST00000568605 SUGCTQ9HAC7 445 aa14.52□□□□□ -0.09
CLK3-224ENST00000568605 RGL1Q9NZL6 768 aa14.52□□□□□ -0.09
CLK3-224ENST00000568605 LRWD1Q9UFC0 647 aa14.52□□□□□ -0.09
CLK3-224ENST00000568605 MSRAQ9UJ68 235 aa14.52□□□□□ -0.09
CLK3-224ENST00000568605 GINS2Q9Y248 185 aa14.52□□□□□ -0.09
CLK3-224ENST00000568605 MAFO75444 373 aaPredicted RBP14.51□□□□□ -0.09
CLK3-224ENST00000568605 LYPLA2O95372 231 aa14.51□□□□□ -0.09
CLK3-224ENST00000568605 AMHP03971 560 aa14.51□□□□□ -0.09
CLK3-224ENST00000568605 ATP2C1P98194 919 aaPredicted RBP14.51□□□□□ -0.09
CLK3-224ENST00000568605 PDIA5Q14554 519 aa14.51□□□□□ -0.09
CLK3-224ENST00000568605 LPIN1Q14693 890 aa14.51□□□□□ -0.09
CLK3-224ENST00000568605 GPNMBQ14956 572 aa14.51□□□□□ -0.09
CLK3-224ENST00000568605 XKR9Q5GH70 373 aa14.51□□□□□ -0.09
CLK3-224ENST00000568605 ARL6IP4Q66PJ3 421 aaKnown RBP14.51□□□□□ -0.09
CLK3-224ENST00000568605 KIAA0319LQ8IZA0 1049 aa14.51□□□□□ -0.09
CLK3-224ENST00000568605 TCP11Q8WWU5 503 aa14.51□□□□□ -0.09
CLK3-224ENST00000568605 HSD17B14Q9BPX1 270 aa14.51□□□□□ -0.09
CLK3-224ENST00000568605 POLR3CQ9BUI4 534 aaPredicted RBP14.51□□□□□ -0.09
CLK3-224ENST00000568605 FTHL17Q9BXU8 183 aa14.51□□□□□ -0.09
CLK3-224ENST00000568605 ZSCAN16Q9H4T2 348 aaPredicted RBP14.51□□□□□ -0.09
CLK3-224ENST00000568605 ANKEF1Q9NU02 776 aa14.51□□□□□ -0.09
CLK3-224ENST00000568605 TDRD15B5MCY1 1934 aaKnown RBP14.51□□□□□ -0.09
CLK3-224ENST00000568605 TMEM150BA6NC51 233 aa14.5□□□□□ -0.09
CLK3-224ENST00000568605 SLITRK3O94933 977 aa14.5□□□□□ -0.09
CLK3-224ENST00000568605 STBD1O95210 358 aa14.5□□□□□ -0.09
CLK3-224ENST00000568605 VTNP04004 478 aa14.5□□□□□ -0.09
CLK3-224ENST00000568605 DNAJB2P25686 324 aa14.5□□□□□ -0.09
CLK3-224ENST00000568605 RPA1P27694 616 aa14.5□□□□□ -0.09
CLK3-224ENST00000568605 CRYBB1P53674 252 aaPredicted RBP14.5□□□□□ -0.09
CLK3-224ENST00000568605 BECN1Q14457 450 aa14.5□□□□□ -0.09
CLK3-224ENST00000568605 KRT79Q5XKE5 535 aa14.5□□□□□ -0.09
CLK3-224ENST00000568605 LINC01465Q8N7H1 131 aa14.5□□□□□ -0.09
CLK3-224ENST00000568605 C4orf32Q8N8J7 132 aa14.5□□□□□ -0.09
CLK3-224ENST00000568605 IGSF22Q8N9C0 903 aa14.5□□□□□ -0.09
CLK3-224ENST00000568605 SNX29Q8TEQ0 813 aa14.5□□□□□ -0.09
CLK3-224ENST00000568605 MTRQ99707 1265 aa14.5□□□□□ -0.09
CLK3-224ENST00000568605 WRAP73Q9P2S5 460 aaPredicted RBP14.5□□□□□ -0.09
CLK3-224ENST00000568605 IGKV6-21A0A0C4DH24 114 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 RPS6KA5O75582 802 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 DGAT1O75907 488 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 XRCC6P12956 609 aaKnown RBP eCLIP14.49□□□□□ -0.09
CLK3-224ENST00000568605 CCT6AP40227 531 aaKnown RBP14.49□□□□□ -0.09
CLK3-224ENST00000568605 NLRP11P59045 1033 aaKnown RBP14.49□□□□□ -0.09
CLK3-224ENST00000568605 EMC2Q15006 297 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 KIZQ2M2Z5 673 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 FAM109BQ6ICB4 259 aaPredicted RBP14.49□□□□□ -0.09
CLK3-224ENST00000568605 ZNF410Q86VK4 478 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 NLRP7Q8WX94 980 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 PSPC1Q8WXF1 523 aaKnown RBP14.49□□□□□ -0.09
CLK3-224ENST00000568605 TIFAQ96CG3 184 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 NACC1Q96RE7 527 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 OSMRQ99650 979 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 ZBED2Q9BTP6 218 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 DHX33Q9H6R0 707 aaKnown RBP14.49□□□□□ -0.09
CLK3-224ENST00000568605 ATP6V0A4Q9HBG4 840 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 RNF216Q9NWF9 866 aaPredicted RBP14.49□□□□□ -0.09
CLK3-224ENST00000568605 MTMR6Q9Y217 621 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 PCDHA11Q9Y5I1 949 aa14.49□□□□□ -0.09
CLK3-224ENST00000568605 GPR182O15218 404 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 CD52P31358 61 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 GPC3P51654 580 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 NPEPPSP55786 919 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 RESTQ13127 1097 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 POTEGQ6S5H5 508 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 CATSPER3Q86XQ3 398 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 HERC6Q8IVU3 1022 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 MYOCDQ8IZQ8 938 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 CDK5RAP3Q96JB5 506 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 AK8Q96MA6 479 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 CEP89Q96ST8 783 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 PPP1R16BQ96T49 567 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 SH2D3AQ9BRG2 576 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 PBX4Q9BYU1 374 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 INO80BQ9C086 356 aaPredicted RBP14.48□□□□□ -0.09
CLK3-224ENST00000568605 DBR1Q9UK59 544 aaKnown RBP14.48□□□□□ -0.09
CLK3-224ENST00000568605 PADI3Q9ULW8 664 aa14.48□□□□□ -0.09
CLK3-224ENST00000568605 VWA3AA6NCI4 1184 aa14.47□□□□□ -0.09
CLK3-224ENST00000568605 TLL1O43897 1013 aa14.47□□□□□ -0.09
CLK3-224ENST00000568605 MED24O75448 989 aa14.47□□□□□ -0.09
CLK3-224ENST00000568605 SPATA31C1P0DKV0 1188 aa14.47□□□□□ -0.09
CLK3-224ENST00000568605 SFPQP23246 707 aaKnown RBP eCLIP14.47□□□□□ -0.09
CLK3-224ENST00000568605 RARRES1P49788 294 aa14.47□□□□□ -0.09
CLK3-224ENST00000568605 DEFB103AP81534 67 aa14.47□□□□□ -0.09
CLK3-224ENST00000568605 NFX1Q12986 1120 aaKnown RBP14.47□□□□□ -0.09
CLK3-224ENST00000568605 RHPN2Q8IUC4 686 aa14.47□□□□□ -0.09
CLK3-224ENST00000568605 MCPH1Q8NEM0 835 aa14.47□□□□□ -0.09
CLK3-224ENST00000568605 GCOM2Q9BZD3 368 aaPredicted RBP14.47□□□□□ -0.09
CLK3-224ENST00000568605 NT5C3AQ9H0P0 336 aa14.47□□□□□ -0.09
CLK3-224ENST00000568605 SLC28A3Q9HAS3 691 aa14.47□□□□□ -0.09
CLK3-224ENST00000568605 SUCLA2Q9P2R7 463 aaPredicted RBP14.47□□□□□ -0.09
CLK3-224ENST00000568605 COL4A3BPQ9Y5P4 624 aa14.47□□□□□ -0.09
CLK3-224ENST00000568605 LAMA2P24043 3122 aaKnown RBP14.46□□□□□ -0.09
CLK3-224ENST00000568605 CITO14578 2027 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms