RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 IGSF22Q8N9C0 903 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 ZNF579Q8NAF0 562 aaKnown RBP10.47□□□□□ -0.73
LDLR-211ENST00000560173 DBF4BQ8NFT6 615 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 MAFAQ8NHW3 353 aaPredicted RBP10.47□□□□□ -0.73
LDLR-211ENST00000560173 ERMNQ8TAM6 284 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 SEPT8Q92599 483 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 MAP7D2Q96T17 732 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 CDX2Q99626 313 aaPredicted RBP10.47□□□□□ -0.73
LDLR-211ENST00000560173 POLR3CQ9BUI4 534 aaPredicted RBP10.47□□□□□ -0.73
LDLR-211ENST00000560173 IFIH1Q9BYX4 1025 aaKnown RBP10.47□□□□□ -0.73
LDLR-211ENST00000560173 CELF4Q9BZC1 486 aaKnown RBP10.47□□□□□ -0.73
LDLR-211ENST00000560173 TUFT1Q9NNX1 390 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 PPME1Q9Y570 386 aa10.47□□□□□ -0.73
LDLR-211ENST00000560173 EVPLQ92817 2033 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.46□□□□□ -0.73
LDLR-211ENST00000560173 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.46□□□□□ -0.73
LDLR-211ENST00000560173 GRXCR1A8MXD5 290 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 ZBTB39O15060 712 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 EFCAB14O75071 495 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 GPR32O75388 356 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 MAFO75444 373 aaPredicted RBP10.46□□□□□ -0.73
LDLR-211ENST00000560173 MED24O75448 989 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 VTNP04004 478 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 HSP90AA1P07900 732 aaKnown RBP10.46□□□□□ -0.73
LDLR-211ENST00000560173 ATP2A2P16615 1042 aaKnown RBP10.46□□□□□ -0.73
LDLR-211ENST00000560173 RPA1P27694 616 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 TMOD1P28289 359 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 RFC5P40937 340 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 DRP2Q13474 957 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 IKBKEQ14164 716 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 PDIA5Q14554 519 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 KIZQ2M2Z5 673 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 ZNF697Q5TEC3 545 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 HAUS3Q68CZ6 603 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 DTHD1Q6ZMT9 781 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 OTUD6AQ7L8S5 288 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 CATSPER3Q86XQ3 398 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 USP38Q8NB14 1042 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 SYMPKQ92797 1274 aaKnown RBP10.46□□□□□ -0.73
LDLR-211ENST00000560173 APBB2Q92870 758 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 CEP170P1Q96L14 293 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 SLC9A7Q96T83 725 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 RAB34Q9BZG1 259 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 DHX33Q9H6R0 707 aaKnown RBP10.46□□□□□ -0.73
LDLR-211ENST00000560173 AGO3Q9H9G7 860 aaKnown RBP10.46□□□□□ -0.73
LDLR-211ENST00000560173 SUGCTQ9HAC7 445 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 CDHR5Q9HBB8 845 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 ANKEF1Q9NU02 776 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 LRWD1Q9UFC0 647 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 RAPGEFL1Q9UHV5 662 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 AKT3Q9Y243 479 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 SQORQ9Y6N5 450 aa10.46□□□□□ -0.73
LDLR-211ENST00000560173 BMP15O95972 392 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 XRCC6P12956 609 aaKnown RBP eCLIP10.45□□□□□ -0.74
LDLR-211ENST00000560173 CD52P31358 61 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 KCNJ6P48051 423 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 GPC3P51654 580 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 CRYBB1P53674 252 aaPredicted RBP10.45□□□□□ -0.74
LDLR-211ENST00000560173 POLGP54098 1239 aaPredicted RBP10.45□□□□□ -0.74
LDLR-211ENST00000560173 DEFB103AP81534 67 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 EMC2Q15006 297 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 XKR9Q5GH70 373 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 ARL6IP4Q66PJ3 421 aaKnown RBP10.45□□□□□ -0.74
LDLR-211ENST00000560173 FAM173BQ6P4H8 233 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 POTEGQ6S5H5 508 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 ZNF710Q8N1W2 664 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 PHOSPHO2Q8TCD6 241 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 TMEM40Q8WWA1 233 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 SLC7A3Q8WY07 619 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 PPP1R16BQ96T49 567 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 OSMRQ99650 979 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 JPH2Q9BR39 696 aaPredicted RBP10.45□□□□□ -0.74
LDLR-211ENST00000560173 ADAMTS10Q9H324 1103 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 GINS2Q9Y248 185 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 MICAL3Q7RTP6 2002 aa10.45□□□□□ -0.74
LDLR-211ENST00000560173 ARID2Q68CP9 1835 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 A0A087WWV3 80 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.44□□□□□ -0.74
LDLR-211ENST00000560173 PP2D1A8MPX8 630 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 GAS2O43903 313 aaKnown RBP10.44□□□□□ -0.74
LDLR-211ENST00000560173 MUTP22033 750 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 DNAJB2P25686 324 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 CCT6AP40227 531 aaKnown RBP10.44□□□□□ -0.74
LDLR-211ENST00000560173 PBX2P40425 430 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 RARRES1P49788 294 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 DNM2P50570 870 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 NLRP11P59045 1033 aaKnown RBP10.44□□□□□ -0.74
LDLR-211ENST00000560173 PAK2Q13177 524 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 SF3A1Q15459 793 aaKnown RBP10.44□□□□□ -0.74
LDLR-211ENST00000560173 RAB30Q15771 203 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 ECM1Q16610 540 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.44□□□□□ -0.74
LDLR-211ENST00000560173 HERC6Q8IVU3 1022 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 EXOC8Q8IYI6 725 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 SPRYD3Q8NCJ5 442 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 SNX29Q8TEQ0 813 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 PIGOQ8TEQ8 1089 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 LINC01599Q8WXQ3 324 aa10.44□□□□□ -0.74
LDLR-211ENST00000560173 CCDC43Q96MW1 224 aaKnown RBP10.44□□□□□ -0.74
LDLR-211ENST00000560173 NACC1Q96RE7 527 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms