RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 HPSEQ9Y251 543 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 PP2D1A8MPX8 630 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 PFDN6O15212 129 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 ECE2O60344 883 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 MARK3P27448 753 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 BASP1P80723 227 aaKnown RBP12.4□□□□□ -0.42
NOD1-201ENST00000222823 KCNH2Q12809 1159 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 SLMAPQ14BN4 828 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 PPP1R18Q6NYC8 613 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 RPF1Q9H9Y2 349 aaKnown RBP12.4□□□□□ -0.42
NOD1-201ENST00000222823 CCDC188H7C350 402 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 LDHAP00338 332 aaKnown RBP12.4□□□□□ -0.42
NOD1-201ENST00000222823 ACTN1P12814 892 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 PRELPP51888 382 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 COL9A3Q14050 684 aaPredicted RBP12.4□□□□□ -0.42
NOD1-201ENST00000222823 MAP3K21Q5TCX8 1036 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 NEK9Q8TD19 979 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 WHAMMQ8TF30 809 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 RAD54LQ92698 747 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 RAB3IPQ96QF0 476 aaPredicted RBP12.4□□□□□ -0.42
NOD1-201ENST00000222823 ZHX2Q9Y6X8 837 aa12.4□□□□□ -0.42
NOD1-201ENST00000222823 SLCO1A2P46721 670 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 RWDD2BP57060 319 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 IFT88Q13099 833 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 SPP2Q13103 211 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 ZKSCAN8Q15776 578 aaPredicted RBP12.39□□□□□ -0.43
NOD1-201ENST00000222823 C12orf60Q5U649 245 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 LRP10Q7Z4F1 713 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 GUF1Q8N442 669 aaKnown RBP12.39□□□□□ -0.43
NOD1-201ENST00000222823 CCDC197Q8NCU1 140 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 RAVER2Q9HCJ3 691 aaKnown RBP12.39□□□□□ -0.43
NOD1-201ENST00000222823 CEP72Q9P209 647 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 GPC4O75487 556 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 CAMTA2O94983 1202 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 ATP2C1P98194 919 aaPredicted RBP12.39□□□□□ -0.43
NOD1-201ENST00000222823 TOGARAM2Q6ZUX3 1019 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 DNAAF3Q8N9W5 541 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 SLC10A4Q96EP9 437 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 ABCB6Q9NP58 842 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 HOXC10Q9NYD6 342 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 AFF2P51816 1311 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 PRPSAP2O60256 369 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 FGGP02679 453 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 GCLMP48507 274 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 COASYQ13057 564 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 SCARA5Q6ZMJ2 495 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 CFAP61Q8NHU2 1237 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 PPP1R16BQ96T49 567 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 PHF20Q9BVI0 1012 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 FBXO40Q9UH90 709 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 CLDN3O15551 220 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 TDP2O95551 362 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 KRT76Q01546 638 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 DR1Q01658 176 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 PRPSAP1Q14558 356 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 STXBP2Q15833 593 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 EMBQ6PCB8 327 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 ERICH1Q86X53 443 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 METTL23Q86XA0 190 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 BBS5Q8N3I7 341 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 PRPF38AQ8NAV1 312 aaKnown RBP12.39□□□□□ -0.43
NOD1-201ENST00000222823 NSUN6Q8TEA1 469 aaKnown RBP12.39□□□□□ -0.43
NOD1-201ENST00000222823 NSUN4Q96CB9 384 aaKnown RBP12.39□□□□□ -0.43
NOD1-201ENST00000222823 FEM1BQ9UK73 627 aa12.39□□□□□ -0.43
NOD1-201ENST00000222823 LRRC53A6NM62 1247 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 RASGRF2O14827 1237 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 TEX33O43247 280 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 FGFR2P21802 821 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 ECE1P42892 770 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 MSH2P43246 934 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 NNTQ13423 1086 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 TRIP13Q15645 432 aaPredicted RBP12.38□□□□□ -0.43
NOD1-201ENST00000222823 KNOP1Q1ED39 458 aaKnown RBP12.38□□□□□ -0.43
NOD1-201ENST00000222823 ZNF667Q5HYK9 610 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 DARS2Q6PI48 645 aaKnown RBP12.38□□□□□ -0.43
NOD1-201ENST00000222823 STAG2Q8N3U4 1231 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.38□□□□□ -0.43
NOD1-201ENST00000222823 KCTD6Q8NC69 237 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 BANK1Q8NDB2 785 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 CCHCR1Q8TD31 782 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 WRNIP1Q96S55 665 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 WDR70Q9NW82 654 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 POTEFA5A3E0 1075 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 CASQ2O14958 399 aaPredicted RBP12.38□□□□□ -0.43
NOD1-201ENST00000222823 CPP00450 1065 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 POTEIP0CG38 1075 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 AKR1B1P15121 316 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 ZSCAN20P17040 1043 aaPredicted RBP12.38□□□□□ -0.43
NOD1-201ENST00000222823 GPSM2P81274 684 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 ZNF394Q53GI3 561 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 MUM1L1Q5H9M0 696 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 POTEGQ6S5H5 508 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 POTEEQ6S8J3 1075 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 ARHGEF18Q6ZSZ5 1173 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 ADGRF4Q8IZF3 695 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 ZNF710Q8N1W2 664 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 HEXIM2Q96MH2 286 aaKnown RBP12.38□□□□□ -0.43
NOD1-201ENST00000222823 MAP3K14Q99558 947 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 RNF146Q9NTX7 359 aa12.38□□□□□ -0.43
NOD1-201ENST00000222823 ADAM22Q9P0K1 906 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms