RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ITGB3BPQ13352 177 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 MTERF2Q49AM1 385 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 PCNX4Q63HM2 1172 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 PPP4R3AQ6IN85 833 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 VSIG10LQ86VR7 867 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 GPBP1Q86WP2 473 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 GSPT2Q8IYD1 628 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 TMEM87AQ8NBN3 555 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 NAP1L4Q99733 375 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 FUCA2Q9BTY2 467 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 SEPT9Q9UHD8 586 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 PNMA2Q9UL42 364 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 A0A1W2PQ27 194 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 A0A1W2PQ64 194 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 A0A1W2PQD8 194 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 CA12O43570 354 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 MYBL1P10243 752 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 SP3Q02447 781 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 LRRC41Q15345 812 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 ECM1Q16610 540 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 XKR9Q5GH70 373 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 ARL6IP4Q66PJ3 421 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 HAUS3Q68CZ6 603 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 RAET1EQ8TD07 263 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 SPATA33Q96N06 139 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 LXNQ9BS40 222 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 JADE2Q9NQC1 790 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 DNM3Q9UQ16 869 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 ASTN1O14525 1302 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 TPM1P09493 284 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 MAPK4P31152 587 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 GSDMDP57764 484 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 INHBEP58166 350 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 PRKCZQ05513 592 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 PDXDC2PQ6P474 469 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 SV2BQ7L1I2 683 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 GOLGA1Q92805 767 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 ZBTB10Q96DT7 871 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 JPH1Q9HDC5 661 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 TRPC6Q9Y210 931 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 IGLV3-22A0A075B6J6 115 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 ARHGEF35A5YM69 484 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 ERLIN1O75477 346 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 H2AFXP16104 143 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 SOX10P56693 466 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 SP2Q02086 613 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 SYCP1Q15431 976 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 ZNF569Q5MCW4 686 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 MCTP2Q6DN12 878 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 CATSPER3Q86XQ3 398 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 LENG9Q96B70 501 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 MTMR9Q96QG7 549 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 CRACR2AQ9BSW2 395 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 AGO4Q9HCK5 861 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 SLC5A4Q9NY91 659 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 TRIM17Q9Y577 477 aa9.55□□□□□ -0.88
LIMCH1-209ENST00000509277 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 ARIH2O95376 493 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 FCGRTP55899 365 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 TRIM32Q13049 653 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 FAM47CQ5HY64 1035 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 NELFCDQ8IXH7 590 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 LARP4BQ92615 738 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 FAM20AQ96MK3 541 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 SLC39A2Q9NP94 309 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 RNF186Q9NXI6 227 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 SLC9A2Q9UBY0 812 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 EBAG9O00559 213 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 ATP1A2P50993 1020 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 BEX3Q00994 111 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 ARMCX5Q6P1M9 558 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 ETNPPLQ8TBG4 499 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 N4BP2L2Q92802 583 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 PAGE5Q96GU1 130 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 AZI2Q9H6S1 392 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 MKI67P46013 3256 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 LAD1O00515 517 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 RGS20O76081 388 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 C6orf222P0C671 652 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 ZNF286BP0CG31 522 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 UBA1P22314 1058 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 GRB10Q13322 594 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 TMEM132AQ24JP5 1023 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 HSDL1Q3SXM5 330 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 HERC4Q5GLZ8 1057 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 NYAP1Q6ZVC0 841 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 METTL13Q8N6R0 699 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 FAM133AQ8N9E0 248 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 CCDC47Q96A33 483 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 CALR3Q96L12 384 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 TRIM47Q96LD4 638 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 PSMB7Q99436 277 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 ABCB6Q9NP58 842 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 EXOC1Q9NV70 894 aa9.54□□□□□ -0.88
LIMCH1-209ENST00000509277 PLA2G4BP0C869 781 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 CDR1P51861 262 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 ACTR2P61160 394 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 TTLL4Q14679 1199 aa9.53□□□□□ -0.88
LIMCH1-209ENST00000509277 UGCGQ16739 394 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms