RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 MYCT1Q8N699 235 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 SRRTQ9BXP5 876 aaKnown RBP20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 MRPL44Q9H9J2 332 aaKnown RBP20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 LARSQ9P2J5 1176 aaKnown RBP20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 WRAP73Q9P2S5 460 aaPredicted RBP20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 PCDHA2Q9Y5H9 948 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 PLXNA1Q9UIW2 1896 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 SLC15A5A6NIM6 579 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 EIF3DO15371 548 aaKnown RBP eCLIP20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 STX10O60499 249 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 ADORA2AP29274 412 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 ZNF131P52739 623 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 CACNB1Q02641 598 aaPredicted RBP20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 TTLL4Q14679 1199 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 ZNF792Q3KQV3 632 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 ANKRD40Q6AI12 368 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 CYFIP1Q7L576 1253 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 SCFD2Q8WU76 684 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 HPS3Q969F9 1004 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 PPP1R13BQ96KQ4 1090 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 MLXIPQ9HAP2 919 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 VTA1Q9NP79 307 aa20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 ABT1Q9ULW3 272 aaKnown RBP20.09■□□□□ 0.81
CCDC88C-203ENST00000389856 ZNF236Q9UL36 1845 aa20.08■□□□□ 0.81
CCDC88C-203ENST00000389856 TRIM49BA6NDI0 452 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 LRRC10BA6NIK2 292 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 USP27XA6NNY8 438 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 ATG7O95352 703 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 GNA14O95837 355 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 MAPTP10636 758 aaKnown RBP20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 HSP90AA4PQ58FG1 418 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 XKR9Q5GH70 373 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 XKR3Q5GH77 459 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 SWSAP1Q6NVH7 229 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 GPR142Q7Z601 462 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 DPP9Q86TI2 863 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 FGD4Q96M96 766 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 ZNF302Q9NR11 478 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 INTS13Q9NVM9 706 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 KCNG1Q9UIX4 513 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 IGSF9BQ9UPX0 1349 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 WDR81Q562E7 1941 aa20.08■□□□□ 0.8
CCDC88C-203ENST00000389856 RBM10P98175 930 aaKnown RBP20.07■□□□□ 0.8
CCDC88C-203ENST00000389856 FKBP3Q00688 224 aaKnown RBP20.07■□□□□ 0.8
CCDC88C-203ENST00000389856 BMT2Q1RMZ1 405 aa20.07■□□□□ 0.8
CCDC88C-203ENST00000389856 FAM178BQ8IXR5 827 aa20.07■□□□□ 0.8
CCDC88C-203ENST00000389856 MSL3Q8N5Y2 521 aaKnown RBP20.07■□□□□ 0.8
CCDC88C-203ENST00000389856 ANKRD7Q92527 254 aa20.07■□□□□ 0.8
CCDC88C-203ENST00000389856 CEP63Q96MT8 703 aa20.07■□□□□ 0.8
CCDC88C-203ENST00000389856 DUSP9Q99956 384 aaKnown RBP20.07■□□□□ 0.8
CCDC88C-203ENST00000389856 SEMA6BQ9H3T3 888 aa20.07■□□□□ 0.8
CCDC88C-203ENST00000389856 ZFYVE28Q9HCC9 887 aa20.07■□□□□ 0.8
CCDC88C-203ENST00000389856 TBC1D7Q9P0N9 293 aa20.07■□□□□ 0.8
CCDC88C-203ENST00000389856 PCDHB13Q9Y5F0 798 aa20.07■□□□□ 0.8
CCDC88C-203ENST00000389856 MYH9P35579 1960 aaKnown RBP20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 MYH11P35749 1972 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 TMEM88BA6NKF7 163 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 N4BP3O15049 544 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 CALUO43852 315 aaPredicted RBP20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 FARP2O94887 1054 aaPredicted RBP20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 GGPS1O95749 300 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 SP2Q02086 613 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 SP4Q02446 784 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 GRB14Q14449 540 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 KRT31Q15323 416 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 LRRC41Q15345 812 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 EDRF1Q3B7T1 1238 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 ARMCX2Q7L311 632 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 MCPH1Q8NEM0 835 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 SEPT1Q8WYJ6 367 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 PANX2Q96RD6 677 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 NAA15Q9BXJ9 866 aaKnown RBP20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 TRMT1Q9NXH9 659 aaKnown RBP20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 DDX41Q9UJV9 622 aaKnown RBP20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 PPME1Q9Y570 386 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 DOCK5Q9H7D0 1870 aa20.06■□□□□ 0.8
CCDC88C-203ENST00000389856 NOP56O00567 594 aaKnown RBP20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 ZBTB39O15060 712 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 HIP1RO75146 1068 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 GCNT3O95395 438 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 ABCD1P33897 745 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 COPB1P53618 953 aaKnown RBP20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 PMS1P54277 932 aaKnown RBP20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 FSTL1Q12841 308 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 UGCGQ16739 394 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 KNOP1Q1ED39 458 aaKnown RBP20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 ODR4Q5SWX8 454 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 EPM2AIP1Q7L775 607 aaPredicted RBP20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 IFNL1Q8IU54 200 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 CREBRFQ8IUR6 639 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 SCFD1Q8WVM8 642 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 CCDC51Q96ER9 411 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 FAM167AQ96KS9 214 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 AZI2Q9H6S1 392 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 C17orf75Q9HAS0 396 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 ITIH6Q6UXX5 1313 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 SYNGAP1Q96PV0 1343 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 PDXKO00764 312 aa20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 USO1O60763 962 aaKnown RBP20.05■□□□□ 0.8
CCDC88C-203ENST00000389856 DGAT1O75907 488 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms