RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 TADA2BQ86TJ2 420 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 UBLCP1Q8WVY7 318 aaPredicted RBP11.32□□□□□ -0.6
LIG1-220ENST00000601091 CEP95Q96GE4 821 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 SLC4A9Q96Q91 983 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 SPZ1Q9BXG8 430 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 RASAL2Q9UJF2 1139 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 ATP8A1Q9Y2Q0 1164 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 PCDHB13Q9Y5F0 798 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 KIF1AQ12756 1690 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 LDHAP00338 332 aaKnown RBP11.32□□□□□ -0.6
LIG1-220ENST00000601091 USH1GQ495M9 461 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 GUF1Q8N442 669 aaKnown RBP11.32□□□□□ -0.6
LIG1-220ENST00000601091 MARCH10Q8NA82 808 aaPredicted RBP11.32□□□□□ -0.6
LIG1-220ENST00000601091 BCAS4Q8TDM0 211 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 PLVAPQ9BX97 442 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 YIPF3Q9GZM5 350 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 AGPAT5Q9NUQ2 364 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 TRIM10Q9UDY6 481 aa11.32□□□□□ -0.6
LIG1-220ENST00000601091 A0A087X0B3 334 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 USP17L5A8MUK1 530 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 EIF3FO00303 357 aaPredicted RBP11.31□□□□□ -0.6
LIG1-220ENST00000601091 TNFAIP3P21580 790 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 HPDP32754 393 aaPredicted RBP11.31□□□□□ -0.6
LIG1-220ENST00000601091 CETN2P41208 172 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 GUCY2FP51841 1108 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 ERVK-24P63145 666 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 GNGT1P63211 74 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 GUCY2DQ02846 1103 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 STK4Q13043 487 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 RSRC2Q7L4I2 434 aaKnown RBP11.31□□□□□ -0.6
LIG1-220ENST00000601091 CCDC17Q96LX7 622 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 GPR101Q96P66 508 aaPredicted RBP11.31□□□□□ -0.6
LIG1-220ENST00000601091 NAP1L3Q99457 506 aaPredicted RBP11.31□□□□□ -0.6
LIG1-220ENST00000601091 CD209Q9NNX6 404 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 BCL9O00512 1426 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 BAZ2BQ9UIF8 2168 aaKnown RBP11.31□□□□□ -0.6
LIG1-220ENST00000601091 PNMA6FA0A0J9YX94 578 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 POTEJP0CG39 1038 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 DESP17661 470 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 NR2F2P24468 414 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 THEMIS2Q5TEJ8 643 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 PDXDC2PQ6P474 469 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 FAM196AQ6ZSG2 479 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 CAPN12Q6ZSI9 719 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 SYCE1Q8N0S2 351 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 MYCT1Q8N699 235 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 INO80BQ9C086 356 aaPredicted RBP11.31□□□□□ -0.6
LIG1-220ENST00000601091 KDM3BQ7LBC6 1761 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 POTEMA6NI47 508 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 UBAP1LF5GYI3 381 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 EIF4BP23588 611 aaKnown RBP11.31□□□□□ -0.6
LIG1-220ENST00000601091 SLC16A2P36021 539 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 RUFY4Q6ZNE9 571 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 SH3RF1Q7Z6J0 888 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 POTEDQ86YR6 584 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.31□□□□□ -0.6
LIG1-220ENST00000601091 CEP295NLQ96MC4 621 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 C7orf25Q9BPX7 421 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 EMILIN3Q9NT22 766 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 TMEM98Q9Y2Y6 226 aa11.31□□□□□ -0.6
LIG1-220ENST00000601091 BZW2Q9Y6E2 419 aaKnown RBP11.31□□□□□ -0.6
LIG1-220ENST00000601091 ATRNO75882 1429 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 CHMP2AO43633 222 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 SERPING1P05155 500 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 MSL3P1P0C860 447 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 STAT1P42224 750 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 SCNN1DP51172 638 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 EXOC3L4Q17RC7 722 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 PROM2Q8N271 834 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 NOA1Q8NC60 698 aaKnown RBP11.3□□□□□ -0.6
LIG1-220ENST00000601091 CLIP3Q96DZ5 547 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 RGL1Q9NZL6 768 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 H2AFZP0C0S5 128 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 PLS1Q14651 629 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 KRT72Q14CN4 511 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 UBE2SQ16763 222 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 FBXW10Q5XX13 1052 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 SLFN13Q68D06 897 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 LRRC31Q6UY01 552 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 KCTD1Q719H9 257 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 H2AFVQ71UI9 128 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 RPS6KC1Q96S38 1066 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 MMS19Q96T76 1030 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 UTP11Q9Y3A2 253 aaKnown RBP11.3□□□□□ -0.6
LIG1-220ENST00000601091 MRC1P22897 1456 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 LRRC53A6NM62 1247 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 STXBP3O00186 592 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 PSMD14O00487 310 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 ICA1Q05084 483 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 CCDC174Q6PII3 467 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 KRT26Q7Z3Y9 468 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 ARHGAP22Q7Z5H3 698 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 EPB41L5Q9HCM4 733 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 TMEM260Q9NX78 707 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 PRR12Q9ULL5 1215 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 GJA3Q9Y6H8 435 aa11.3□□□□□ -0.6
LIG1-220ENST00000601091 TLDC2A0PJX2 215 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 LRRC10BA6NIK2 292 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 ATP2C2O75185 946 aa11.29□□□□□ -0.6
LIG1-220ENST00000601091 PLA2G4BP0C869 781 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms