RNA–Protein interactions for RNA: ENST00000577393.1

PPP4R1-204, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 4

Gene PPP4R1, Length 531 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-204	ENST00000577393	GABBR1	Q9UBS5	961 aa		29.83	■■■□□ 2.37
PPP4R1-204	ENST00000577393	CHMP2A	O43633	222 aa		29.82	■■■□□ 2.36
PPP4R1-204	ENST00000577393	CKAP2L	Q8IYA6	745 aa		29.82	■■■□□ 2.36
PPP4R1-204	ENST00000577393	DNAJB3	Q8WWF6	145 aa		29.82	■■■□□ 2.36
PPP4R1-204	ENST00000577393	TBC1D32	Q96NH3	1257 aa		29.82	■■■□□ 2.36
PPP4R1-204	ENST00000577393	TMEM265	A0A087WTH1	108 aa		29.81	■■■□□ 2.36
PPP4R1-204	ENST00000577393	BTBD18	B2RXH4	712 aa		29.81	■■■□□ 2.36
PPP4R1-204	ENST00000577393	ST18	O60284	1047 aa		29.81	■■■□□ 2.36
PPP4R1-204	ENST00000577393	GCFC2	P16383	781 aa	Known RBP	29.81	■■■□□ 2.36
PPP4R1-204	ENST00000577393	RABGGTB	P53611	331 aa		29.81	■■■□□ 2.36
PPP4R1-204	ENST00000577393	RAB30	Q15771	203 aa		29.81	■■■□□ 2.36
PPP4R1-204	ENST00000577393	RSPH3	Q86UC2	560 aa		29.81	■■■□□ 2.36
PPP4R1-204	ENST00000577393	DIS3L2	Q8IYB7	885 aa	Known RBP	29.81	■■■□□ 2.36
PPP4R1-204	ENST00000577393	OSBPL7	Q9BZF2	842 aa		29.81	■■■□□ 2.36
PPP4R1-204	ENST00000577393	MSRA	Q9UJ68	235 aa		29.81	■■■□□ 2.36
PPP4R1-204	ENST00000577393	CCNT1	O60563	726 aa	Known RBP	29.8	■■■□□ 2.36
PPP4R1-204	ENST00000577393	CHRNA1	P02708	482 aa		29.8	■■■□□ 2.36
PPP4R1-204	ENST00000577393	SFN	P31947	248 aa		29.8	■■■□□ 2.36
PPP4R1-204	ENST00000577393	JAK3	P52333	1124 aa		29.8	■■■□□ 2.36
PPP4R1-204	ENST00000577393	DBF4B	Q8NFT6	615 aa		29.8	■■■□□ 2.36
PPP4R1-204	ENST00000577393	GUCD1	Q96NT3	240 aa		29.8	■■■□□ 2.36
PPP4R1-204	ENST00000577393	SLC9A7	Q96T83	725 aa		29.8	■■■□□ 2.36
PPP4R1-204	ENST00000577393	NAP1L4	Q99733	375 aa	Known RBP	29.8	■■■□□ 2.36
PPP4R1-204	ENST00000577393	PCDHA2	Q9Y5H9	948 aa		29.8	■■■□□ 2.36
PPP4R1-204	ENST00000577393	MYH9	P35579	1960 aa	Known RBP	29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	ABHD14A-ACY1	A0A1B0GW23	586 aa		29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	KCNJ6	P48051	423 aa		29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	WDR5	P61964	334 aa	Known RBP	29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	HMGN5	P82970	282 aa	Known RBP	29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	GUCY1B3	Q02153	619 aa		29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	IKBKE	Q14164	716 aa		29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	PLEKHG4	Q58EX7	1191 aa		29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	MTHFD1L	Q6UB35	978 aa		29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	B3GNT9	Q6UX72	402 aa		29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	TRMT1L	Q7Z2T5	733 aa	Known RBP	29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	PHOSPHO2	Q8TCD6	241 aa		29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	BBX	Q8WY36	941 aa	Predicted RBP	29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	FAM49A	Q9H0Q0	323 aa	Predicted RBP	29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	YBX2	Q9Y2T7	364 aa	Known RBP	29.79	■■■□□ 2.36
PPP4R1-204	ENST00000577393	IGSF9B	Q9UPX0	1349 aa		29.78	■■■□□ 2.36
PPP4R1-204	ENST00000577393	KLRC1	P26715	233 aa		29.78	■■■□□ 2.36
PPP4R1-204	ENST00000577393	MGAT3	Q09327	533 aa		29.78	■■■□□ 2.36
PPP4R1-204	ENST00000577393	ZNF484	Q5JVG2	852 aa		29.78	■■■□□ 2.36
PPP4R1-204	ENST00000577393	MIER3	Q7Z3K6	550 aa		29.78	■■■□□ 2.36
PPP4R1-204	ENST00000577393	IL27	Q8NEV9	243 aa		29.78	■■■□□ 2.36
PPP4R1-204	ENST00000577393	C8orf76	Q96K31	380 aa		29.78	■■■□□ 2.36
PPP4R1-204	ENST00000577393	KCNMB3	Q9NPA1	279 aa		29.78	■■■□□ 2.36
PPP4R1-204	ENST00000577393	COL1A2	P08123	1366 aa		29.77	■■■□□ 2.36
PPP4R1-204	ENST00000577393	ZBTB42	B2RXF5	422 aa		29.77	■■■□□ 2.36
PPP4R1-204	ENST00000577393	RDM1	Q8NG50	284 aa		29.77	■■■□□ 2.36
PPP4R1-204	ENST00000577393	FAM20A	Q96MK3	541 aa		29.77	■■■□□ 2.36
PPP4R1-204	ENST00000577393	NKX2-4	Q9H2Z4	354 aa		29.77	■■■□□ 2.36
PPP4R1-204	ENST00000577393	ZNF576	Q9H609	170 aa		29.77	■■■□□ 2.36
PPP4R1-204	ENST00000577393	PCDHA11	Q9Y5I1	949 aa		29.77	■■■□□ 2.36
PPP4R1-204	ENST00000577393	ZNF862	O60290	1169 aa		29.76	■■■□□ 2.35
PPP4R1-204	ENST00000577393	EFCAB14	O75071	495 aa		29.76	■■■□□ 2.35
PPP4R1-204	ENST00000577393	RPLP2	P05387	115 aa	Known RBP	29.76	■■■□□ 2.35
PPP4R1-204	ENST00000577393	MYOG	P15173	224 aa		29.76	■■■□□ 2.35
PPP4R1-204	ENST00000577393	UGCG	Q16739	394 aa		29.76	■■■□□ 2.35
PPP4R1-204	ENST00000577393	FAM184A	Q8NB25	1140 aa		29.76	■■■□□ 2.35
PPP4R1-204	ENST00000577393	SEPT8	Q92599	483 aa		29.76	■■■□□ 2.35
PPP4R1-204	ENST00000577393	GTF3C3	Q9Y5Q9	886 aa		29.76	■■■□□ 2.35
PPP4R1-204	ENST00000577393	CDY2A	Q9Y6F7	541 aa		29.76	■■■□□ 2.35
PPP4R1-204	ENST00000577393	GBF1	Q92538	1859 aa		29.76	■■■□□ 2.35
PPP4R1-204	ENST00000577393	WDR81	Q562E7	1941 aa		29.75	■■■□□ 2.35
PPP4R1-204	ENST00000577393	SMIM35	A0A1B0GVV1	85 aa		29.75	■■■□□ 2.35
PPP4R1-204	ENST00000577393	CD2BP2	O95400	341 aa	Known RBP	29.75	■■■□□ 2.35
PPP4R1-204	ENST00000577393	DEFB103A	P81534	67 aa		29.75	■■■□□ 2.35
PPP4R1-204	ENST00000577393	MRPS6	P82932	125 aa	Known RBP	29.75	■■■□□ 2.35
PPP4R1-204	ENST00000577393	SAFB	Q15424	915 aa	Known RBP eCLIP	29.75	■■■□□ 2.35
PPP4R1-204	ENST00000577393	HERC6	Q8IVU3	1022 aa		29.75	■■■□□ 2.35
PPP4R1-204	ENST00000577393	HAS1	Q92839	578 aa		29.75	■■■□□ 2.35
PPP4R1-204	ENST00000577393	FAM167A	Q96KS9	214 aa		29.75	■■■□□ 2.35
PPP4R1-204	ENST00000577393	CDX2	Q99626	313 aa	Predicted RBP	29.75	■■■□□ 2.35
PPP4R1-204	ENST00000577393	TBX3	O15119	743 aa		29.74	■■■□□ 2.35
PPP4R1-204	ENST00000577393	IER5	Q5VY09	327 aa		29.74	■■■□□ 2.35
PPP4R1-204	ENST00000577393	POTED	Q86YR6	584 aa		29.74	■■■□□ 2.35
PPP4R1-204	ENST00000577393	VAV3	Q9UKW4	847 aa		29.74	■■■□□ 2.35
PPP4R1-204	ENST00000577393	STXBP5L	Q9Y2K9	1186 aa		29.74	■■■□□ 2.35
PPP4R1-204	ENST00000577393	MARCH6	O60337	910 aa		29.73	■■■□□ 2.35
PPP4R1-204	ENST00000577393	OAT	P04181	439 aa		29.73	■■■□□ 2.35
PPP4R1-204	ENST00000577393	GHR	P10912	638 aa		29.73	■■■□□ 2.35
PPP4R1-204	ENST00000577393	PRKCE	Q02156	737 aa		29.73	■■■□□ 2.35
PPP4R1-204	ENST00000577393	TMEM62	Q0P6H9	643 aa		29.73	■■■□□ 2.35
PPP4R1-204	ENST00000577393	GRIN2C	Q14957	1233 aa		29.73	■■■□□ 2.35
PPP4R1-204	ENST00000577393	TMCO2	Q7Z6W1	182 aa	Predicted RBP	29.73	■■■□□ 2.35
PPP4R1-204	ENST00000577393	TMX3	Q96JJ7	454 aa		29.73	■■■□□ 2.35
PPP4R1-204	ENST00000577393	BACH2	Q9BYV9	841 aa		29.73	■■■□□ 2.35
PPP4R1-204	ENST00000577393	SLC28A3	Q9HAS3	691 aa		29.73	■■■□□ 2.35
PPP4R1-204	ENST00000577393	NRBP2	Q9NSY0	501 aa		29.73	■■■□□ 2.35
PPP4R1-204	ENST00000577393	EML1	O00423	815 aa		29.72	■■■□□ 2.35
PPP4R1-204	ENST00000577393	C22orf31	O95567	290 aa		29.72	■■■□□ 2.35
PPP4R1-204	ENST00000577393	PPP2R5C	Q13362	524 aa		29.72	■■■□□ 2.35
PPP4R1-204	ENST00000577393	MKRN4P	Q13434	485 aa	Predicted RBP	29.72	■■■□□ 2.35
PPP4R1-204	ENST00000577393	LPIN1	Q14693	890 aa		29.72	■■■□□ 2.35
PPP4R1-204	ENST00000577393	FBXO47	Q5MNV8	452 aa		29.72	■■■□□ 2.35
PPP4R1-204	ENST00000577393	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	29.72	■■■□□ 2.35
PPP4R1-204	ENST00000577393	NME8	Q8N427	588 aa		29.72	■■■□□ 2.35
PPP4R1-204	ENST00000577393	FBXO18	Q8NFZ0	1043 aa		29.72	■■■□□ 2.35
PPP4R1-204	ENST00000577393	IFIH1	Q9BYX4	1025 aa	Known RBP	29.72	■■■□□ 2.35

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms