RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 HIPK3Q9H422 1215 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 SMARCAD1Q9H4L7 1026 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 ZNF302Q9NR11 478 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.41□□□□□ -0.74
VPS35-206ENST00000565228 ZDHHC9Q9Y397 364 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.41□□□□□ -0.74
VPS35-206ENST00000565228 PCDHA10Q9Y5I2 948 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 GBF1Q92538 1859 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 CDH23Q9H251 3354 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 MROH7Q68CQ1 1323 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 C17orf102A2RUQ5 167 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 TBX3O15119 743 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 NEMFO60524 1076 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 CHRNA1P02708 482 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 SPATA31C1P0DKV0 1188 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 CKBP12277 381 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 RAG1P15918 1043 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 GCFC2P16383 781 aaKnown RBP10.4□□□□□ -0.74
VPS35-206ENST00000565228 BMP8BP34820 402 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 IGBP1P78318 339 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 KRT76Q01546 638 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 MGAT3Q09327 533 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 PPFIA1Q13136 1202 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 MKRN4PQ13434 485 aaPredicted RBP10.4□□□□□ -0.74
VPS35-206ENST00000565228 DRP2Q13474 957 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 TARBP2Q15633 366 aaKnown RBP10.4□□□□□ -0.74
VPS35-206ENST00000565228 TMEM240Q5SV17 173 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 MIS18BP1Q6P0N0 1132 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 PDXDC2PQ6P474 469 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 MIER3Q7Z3K6 550 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 ATP8B4Q8TF62 1192 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 LRRC15Q8TF66 581 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 GLG1Q92896 1179 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 ATP6V0A1Q93050 837 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.4□□□□□ -0.74
VPS35-206ENST00000565228 KATNAL1Q9BW62 490 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 CDHR5Q9HBB8 845 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 BRMS1Q9HCU9 246 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 ERAP1Q9NZ08 941 aa10.4□□□□□ -0.74
VPS35-206ENST00000565228 CXXC1Q9P0U4 656 aaPredicted RBP10.4□□□□□ -0.74
VPS35-206ENST00000565228 POTEB3A0JP26 581 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 PP2D1A8MPX8 630 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 WDR64B1ANS9 1081 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 BACH1O14867 736 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 TLR3O15455 904 aaKnown RBP10.39□□□□□ -0.75
VPS35-206ENST00000565228 MED24O75448 989 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 SLITRK3O94933 977 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 C22orf31O95567 290 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 TXKP42681 527 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 PRKCEQ02156 737 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 PTK7Q13308 1070 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 CTTNQ14247 550 aaKnown RBP10.39□□□□□ -0.75
VPS35-206ENST00000565228 SAFBQ15424 915 aaKnown RBP eCLIP10.39□□□□□ -0.75
VPS35-206ENST00000565228 CALCRLQ16602 461 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 RASIP1Q5U651 963 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 PLA2G4FQ68DD2 849 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 MCTP1Q6DN14 999 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 NCAPH2Q6IBW4 605 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 POTEBQ6S5H4 581 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 MTHFD1LQ6UB35 978 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 ANO5Q75V66 913 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 SMAP1Q8IYB5 467 aaPredicted RBP10.39□□□□□ -0.75
VPS35-206ENST00000565228 SLC17A8Q8NDX2 589 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 DYDC2Q96IM9 177 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 FAM20AQ96MK3 541 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 HSD17B14Q9BPX1 270 aa10.39□□□□□ -0.75
VPS35-206ENST00000565228 MMTAG2Q9BU76 263 aaKnown RBP10.39□□□□□ -0.75
VPS35-206ENST00000565228 TTC12Q9H892 705 aaPredicted RBP10.39□□□□□ -0.75
VPS35-206ENST00000565228 NRCAMQ92823 1304 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 MICAL3Q7RTP6 2002 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 VPS37CA5D8V6 355 aaPredicted RBP10.38□□□□□ -0.75
VPS35-206ENST00000565228 PSAPP07602 524 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 CTSHP09668 335 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 KLRC1P26715 233 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 CDC25AP30304 524 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 TECP42680 631 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 NPEPPSP55786 919 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 CYP4A11Q02928 519 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 FPGSQ05932 587 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 TMEM62Q0P6H9 643 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 PTGDRQ13258 359 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 PTPAQ15257 358 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 EPHA7Q15375 998 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 ZNF365Q70YC5 407 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 DEFB128Q7Z7B8 93 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 TMEM40Q8WWA1 233 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 DNAJB3Q8WWF6 145 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 EIF2AK1Q9BQI3 630 aaKnown RBP10.38□□□□□ -0.75
VPS35-206ENST00000565228 SEZ6LQ9BYH1 1024 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 UBE2OQ9C0C9 1292 aaKnown RBP10.38□□□□□ -0.75
VPS35-206ENST00000565228 ZNF215Q9UL58 517 aaPredicted RBP10.38□□□□□ -0.75
VPS35-206ENST00000565228 TRPC6Q9Y210 931 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 SAMM50Q9Y512 469 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 CLIC4Q9Y696 253 aa10.38□□□□□ -0.75
VPS35-206ENST00000565228 TCHHQ07283 1943 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 GRXCR1A8MXD5 290 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 PITPNM1O00562 1244 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 HBP1O60381 514 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 CXCL10P02778 98 aa10.37□□□□□ -0.75
VPS35-206ENST00000565228 OATP04181 439 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms