RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 CCDC43Q96MW1 224 aaKnown RBP16.76■□□□□ 0.27
NUP54-213ENST00000513352 PLIN2Q99541 437 aa16.76■□□□□ 0.27
NUP54-213ENST00000513352 RNPEPQ9H4A4 650 aa16.76■□□□□ 0.27
NUP54-213ENST00000513352 ZSWIM4Q9H7M6 989 aa16.76■□□□□ 0.27
NUP54-213ENST00000513352 TUFT1Q9NNX1 390 aa16.76■□□□□ 0.27
NUP54-213ENST00000513352 PCDHA7Q9UN72 937 aa16.76■□□□□ 0.27
NUP54-213ENST00000513352 KDM3AQ9Y4C1 1321 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 HAS3O00219 553 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 ZNF862O60290 1169 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 SMIM10L2AP0DMW4 78 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 SMIM10L2BP0DMW5 78 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 RPA1P27694 616 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 PPFIA1Q13136 1202 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 MAPK8IP2Q13387 824 aaPredicted RBP16.75■□□□□ 0.27
NUP54-213ENST00000513352 CSPP1Q1MSJ5 1256 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 POTEGQ6S5H5 508 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 CATSPER3Q86XQ3 398 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 ATP8B4Q8TF62 1192 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 SYMPKQ92797 1274 aaKnown RBP16.75■□□□□ 0.27
NUP54-213ENST00000513352 CALML4Q96GE6 196 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 EPSTI1Q96J88 318 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 POLR3CQ9BUI4 534 aaPredicted RBP16.75■□□□□ 0.27
NUP54-213ENST00000513352 NRBP2Q9NSY0 501 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 WRAP73Q9P2S5 460 aaPredicted RBP16.75■□□□□ 0.27
NUP54-213ENST00000513352 HDAC6Q9UBN7 1215 aa16.75■□□□□ 0.27
NUP54-213ENST00000513352 BRCA2P51587 3418 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 GOLGA6L4A6NEF3 574 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 ARVCFO00192 962 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 HBP1O60381 514 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 CAPN15O75808 1086 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 SLITRK3O94933 977 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 COL6A1P12109 1028 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 ATP4AP20648 1035 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 MTERF2Q49AM1 385 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 XKR3Q5GH77 459 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 PLA2G4FQ68DD2 849 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 SLC39A5Q6ZMH5 540 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 C4orf19Q8IY42 314 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 HSD17B14Q9BPX1 270 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 MMTAG2Q9BU76 263 aaKnown RBP16.74■□□□□ 0.27
NUP54-213ENST00000513352 DDX19AQ9NUU7 478 aaKnown RBP16.74■□□□□ 0.27
NUP54-213ENST00000513352 NOD1Q9Y239 953 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 ATP11BQ9Y2G3 1177 aa16.74■□□□□ 0.27
NUP54-213ENST00000513352 TRIP12Q14669 1992 aaPredicted RBP16.74■□□□□ 0.27
NUP54-213ENST00000513352 A0A087WWV3 80 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 C17orf102A2RUQ5 167 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 TMEM150BA6NC51 233 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 PQBP1O60828 265 aaKnown RBP16.73■□□□□ 0.27
NUP54-213ENST00000513352 SPATA31C1P0DKV0 1188 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 INSRRP14616 1297 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 YWHABP31946 246 aaKnown RBP16.73■□□□□ 0.27
NUP54-213ENST00000513352 KARSQ15046 597 aaKnown RBP16.73■□□□□ 0.27
NUP54-213ENST00000513352 GRIK4Q16099 956 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 NFRKBQ6P4R8 1299 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 USP49Q70CQ1 688 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 OTUD6AQ7L8S5 288 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 PIGOQ8TEQ8 1089 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 TRAPPC12Q8WVT3 735 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 BBXQ8WY36 941 aaPredicted RBP16.73■□□□□ 0.27
NUP54-213ENST00000513352 SETD4Q9NVD3 440 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 FAM13BQ9NYF5 915 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 CCDC39Q9UFE4 941 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 KIAA1024Q9UPX6 916 aa16.73■□□□□ 0.27
NUP54-213ENST00000513352 GRIN2DO15399 1336 aa16.72■□□□□ 0.27
NUP54-213ENST00000513352 GNAT1P11488 350 aa16.72■□□□□ 0.27
NUP54-213ENST00000513352 RTP1P59025 263 aa16.72■□□□□ 0.27
NUP54-213ENST00000513352 ECM1Q16610 540 aa16.72■□□□□ 0.27
NUP54-213ENST00000513352 LRRC26Q2I0M4 334 aa16.72■□□□□ 0.27
NUP54-213ENST00000513352 TRIM60Q495X7 471 aa16.72■□□□□ 0.27
NUP54-213ENST00000513352 XKR9Q5GH70 373 aa16.72■□□□□ 0.27
NUP54-213ENST00000513352 AXDND1Q5T1B0 1012 aaPredicted RBP16.72■□□□□ 0.27
NUP54-213ENST00000513352 SHC4Q6S5L8 630 aa16.72■□□□□ 0.27
NUP54-213ENST00000513352 ZNF579Q8NAF0 562 aaKnown RBP16.72■□□□□ 0.27
NUP54-213ENST00000513352 CEP170P1Q96L14 293 aa16.72■□□□□ 0.27
NUP54-213ENST00000513352 GBP4Q96PP9 640 aa16.72■□□□□ 0.27
NUP54-213ENST00000513352 NACC1Q96RE7 527 aa16.72■□□□□ 0.27
NUP54-213ENST00000513352 SH2D3AQ9BRG2 576 aa16.72■□□□□ 0.27
NUP54-213ENST00000513352 NT5C3AQ9H0P0 336 aa16.72■□□□□ 0.27
NUP54-213ENST00000513352 MROH7Q68CQ1 1323 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 NRCAMQ92823 1304 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 ARID2Q68CP9 1835 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 LOXHD1Q8IVV2 1947 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 ARHGEF35A5YM69 484 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 RRN3P2A6NIE6 340 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 ZBTB39O15060 712 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 TLR3O15455 904 aaKnown RBP16.71■□□□□ 0.27
NUP54-213ENST00000513352 SSBP05455 408 aaKnown RBP eCLIP16.71■□□□□ 0.27
NUP54-213ENST00000513352 PLCG1P19174 1290 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 MUTP22033 750 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 NPEPPSP55786 919 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 ZNF200P98182 395 aaPredicted RBP16.71■□□□□ 0.27
NUP54-213ENST00000513352 PTPN11Q06124 597 aaPredicted RBP16.71■□□□□ 0.27
NUP54-213ENST00000513352 GRB10Q13322 594 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 ZNF484Q5JVG2 852 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 GDF6Q6KF10 455 aaPredicted RBP16.71■□□□□ 0.27
NUP54-213ENST00000513352 UBE2Q1Q7Z7E8 422 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 PDILTQ8N807 584 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 LMBR1Q8WVP7 490 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 PNMA5Q96PV4 448 aa16.71■□□□□ 0.27
NUP54-213ENST00000513352 PANK2Q9BZ23 570 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms