RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	ZBTB42	B2RXF5	422 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	KIF28P	B7ZC32	967 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	ASAP2	O43150	1006 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	B4GALT4	O60513	344 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	DGAT1	O75907	488 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	ECM2	O94769	699 aa	Predicted RBP	5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	STBD1	O95210	358 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	BRD1	O95696	1058 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	OAT	P04181	439 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	MYL3	P08590	195 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	SMIM10L2A	P0DMW4	78 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	SMIM10L2B	P0DMW5	78 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	TMOD1	P28289	359 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	LONP1	P36776	959 aa	Known RBP	5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	NUCB2	P80303	420 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	BEX3	Q00994	111 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	REST	Q13127	1097 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	PTGDR	Q13258	359 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	PPIG	Q13427	754 aa	Known RBP eCLIP	5.71	□□□□□ -1.5	7e-8	■■■□□ 17
HDAC6-223	ENST00000480525	PLCB4	Q15147	1175 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	TRIM60	Q495X7	471 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	TMEM63B	Q5T3F8	832 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	RASIP1	Q5U651	963 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	PSRC1	Q6PGN9	363 aa	Predicted RBP	5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	POTEB	Q6S5H4	581 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	OTUD6A	Q7L8S5	288 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	MIER3	Q7Z3K6	550 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	POTED	Q86YR6	584 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	IFNLR1	Q8IU57	520 aa	Predicted RBP	5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	RPUSD2	Q8IZ73	545 aa	Known RBP	5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	TMEM199	Q8N511	208 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	RETREG2	Q8NC44	543 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	LMBR1	Q8WVP7	490 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	APBB2	Q92870	758 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	GLG1	Q92896	1179 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	PGBD1	Q96JS3	809 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	TRAIP	Q9BWF2	469 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	CCSER1	Q9C0I3	900 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	UNC45A	Q9H3U1	944 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	RNPEP	Q9H4A4	650 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	DHX33	Q9H6R0	707 aa	Known RBP	5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	GJB4	Q9NTQ9	266 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	TUBE1	Q9UJT0	475 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	CFAP45	Q9UL16	551 aa		5.71	□□□□□ -1.5
HDAC6-223	ENST00000480525	LAMA3	Q16787	3333 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	ZNF862	O60290	1169 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	MAF	O75444	373 aa	Predicted RBP	5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	SLITRK3	O94933	977 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	C22orf31	O95567	290 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	F13A1	P00488	732 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	HSP90AA1	P07900	732 aa	Known RBP	5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	ZNF286B	P0CG31	522 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	ZSCAN22	P10073	491 aa	Predicted RBP	5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	SELP	P16109	830 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	ATP4A	P20648	1035 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	PPFIA1	Q13136	1202 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	MKRN4P	Q13434	485 aa	Predicted RBP	5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	MXD4	Q14582	209 aa	Predicted RBP	5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	SLC39A14	Q15043	492 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	PTPA	Q15257	358 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	GRIK4	Q16099	956 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	PTGIS	Q16647	500 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	LRIT3	Q3SXY7	679 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	MARCH8	Q5T0T0	291 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	IER5	Q5VY09	327 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	ANO1	Q5XXA6	986 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	GDF6	Q6KF10	455 aa	Predicted RBP	5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	SWSAP1	Q6NVH7	229 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	PDXDC2P	Q6P474	469 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	TRAF7	Q6Q0C0	670 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	DTHD1	Q6ZMT9	781 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	ZNF410	Q86VK4	478 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	MCPH1	Q8NEM0	835 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	PHOSPHO2	Q8TCD6	241 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	KCNG4	Q8TDN1	519 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	TCP11	Q8WWU5	503 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	ZNF396	Q96N95	335 aa	Predicted RBP	5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	NACC1	Q96RE7	527 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	LXN	Q9BS40	222 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	FTHL17	Q9BXU8	183 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	INO80B	Q9C086	356 aa	Predicted RBP	5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	MTIF3	Q9H2K0	278 aa	Known RBP	5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	HIPK3	Q9H422	1215 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	CUEDC2	Q9H467	287 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	MAGEF1	Q9HAY2	307 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	TMEM39A	Q9NV64	488 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	HDAC6	Q9UBN7	1215 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	PCDHB6	Q9Y5E3	794 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	SRPRB	Q9Y5M8	271 aa	Known RBP	5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	DDX49	Q9Y6V7	483 aa	Known RBP	5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	PTPRS	Q13332	1948 aa		5.7	□□□□□ -1.5
HDAC6-223	ENST00000480525	FAM237A	A0A1B0GTK4	181 aa		5.69	□□□□□ -1.5
HDAC6-223	ENST00000480525	ABHD14A-ACY1	A0A1B0GW23	586 aa		5.69	□□□□□ -1.5
HDAC6-223	ENST00000480525	TRIM43B	A6NCK2	446 aa		5.69	□□□□□ -1.5
HDAC6-223	ENST00000480525	FAM205C	A6NFA0	338 aa		5.69	□□□□□ -1.5
HDAC6-223	ENST00000480525	EML1	O00423	815 aa		5.69	□□□□□ -1.5
HDAC6-223	ENST00000480525	BACH1	O14867	736 aa		5.69	□□□□□ -1.5
HDAC6-223	ENST00000480525	PQBP1	O60828	265 aa	Known RBP	5.69	□□□□□ -1.5
HDAC6-223	ENST00000480525	PPFIA3	O75145	1194 aa		5.69	□□□□□ -1.5
HDAC6-223	ENST00000480525	MYL1	P05976	194 aa		5.69	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 208.9 ms