RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 ARHGAP4P98171 946 aa17.56■□□□□ 0.4
PCDH1-203ENST00000394536 TRADDQ15628 312 aa17.56■□□□□ 0.4
PCDH1-203ENST00000394536 KNOP1Q1ED39 458 aaKnown RBP17.56■□□□□ 0.4
PCDH1-203ENST00000394536 FIGNQ5HY92 759 aa17.56■□□□□ 0.4
PCDH1-203ENST00000394536 GSTA5Q7RTV2 222 aa17.56■□□□□ 0.4
PCDH1-203ENST00000394536 TBC1D31Q96DN5 1066 aa17.56■□□□□ 0.4
PCDH1-203ENST00000394536 HOMER2Q9NSB8 354 aa17.56■□□□□ 0.4
PCDH1-203ENST00000394536 CHORDC1Q9UHD1 332 aaPredicted RBP17.56■□□□□ 0.4
PCDH1-203ENST00000394536 NAB2Q15742 525 aa17.56■□□□□ 0.4
PCDH1-203ENST00000394536 DAGLBQ8NCG7 672 aa17.56■□□□□ 0.4
PCDH1-203ENST00000394536 DHX36Q9H2U1 1008 aaKnown RBP17.56■□□□□ 0.4
PCDH1-203ENST00000394536 JMJD4Q9H9V9 463 aa17.56■□□□□ 0.4
PCDH1-203ENST00000394536 CHD2O14647 1828 aaKnown RBP17.56■□□□□ 0.4
PCDH1-203ENST00000394536 ACTN3Q08043 901 aaPredicted RBP17.55■□□□□ 0.4
PCDH1-203ENST00000394536 TMEM132AQ24JP5 1023 aa17.55■□□□□ 0.4
PCDH1-203ENST00000394536 ZNF746Q6NUN9 644 aaPredicted RBP17.55■□□□□ 0.4
PCDH1-203ENST00000394536 FERP16591 822 aa17.55■□□□□ 0.4
PCDH1-203ENST00000394536 PLCB3Q01970 1234 aa17.55■□□□□ 0.4
PCDH1-203ENST00000394536 C16orf86Q6ZW13 317 aa17.55■□□□□ 0.4
PCDH1-203ENST00000394536 SWAP70Q9UH65 585 aa17.55■□□□□ 0.4
PCDH1-203ENST00000394536 DNAJC12Q9UKB3 198 aa17.55■□□□□ 0.4
PCDH1-203ENST00000394536 BCRP11274 1271 aa17.55■□□□□ 0.4
PCDH1-203ENST00000394536 PSMC2P35998 433 aaKnown RBP17.55■□□□□ 0.4
PCDH1-203ENST00000394536 AARSP49588 968 aaKnown RBP eCLIP17.55■□□□□ 0.4
PCDH1-203ENST00000394536 SEPT2Q15019 361 aa17.55■□□□□ 0.4
PCDH1-203ENST00000394536 RBM26Q5T8P6 1007 aaKnown RBP17.55■□□□□ 0.4
PCDH1-203ENST00000394536 LRCH2Q5VUJ6 765 aa17.55■□□□□ 0.4
PCDH1-203ENST00000394536 SLC51AQ86UW1 340 aa17.55■□□□□ 0.4
PCDH1-203ENST00000394536 TRIM51Q9BSJ1 452 aa17.55■□□□□ 0.4
PCDH1-203ENST00000394536 PLVAPQ9BX97 442 aa17.55■□□□□ 0.4
PCDH1-203ENST00000394536 NSRP1Q9H0G5 558 aaKnown RBP17.55■□□□□ 0.4
PCDH1-203ENST00000394536 SIK3Q9Y2K2 1263 aa17.55■□□□□ 0.4
PCDH1-203ENST00000394536 SNX1Q13596 522 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.54■□□□□ 0.4
PCDH1-203ENST00000394536 AENQ8WTP8 325 aaKnown RBP17.54■□□□□ 0.4
PCDH1-203ENST00000394536 TCP11Q8WWU5 503 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 SH2D3AQ9BRG2 576 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 EHMT1Q9H9B1 1298 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 TMOD4Q9NZQ9 345 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 SALL4Q9UJQ4 1053 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 MYBP10242 640 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 NMT1P30419 496 aaKnown RBP17.54■□□□□ 0.4
PCDH1-203ENST00000394536 ZNF543Q08ER8 600 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 SEMA3FQ13275 785 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 OTUD6AQ7L8S5 288 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 HOOK2Q96ED9 719 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 MMTAG2Q9BU76 263 aaKnown RBP17.54■□□□□ 0.4
PCDH1-203ENST00000394536 EDEM3Q9BZQ6 932 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 TNS2Q63HR2 1409 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 ANKRD62A6NC57 917 aa17.54■□□□□ 0.4
PCDH1-203ENST00000394536 MDH1P40925 334 aaKnown RBP17.54■□□□□ 0.4
PCDH1-203ENST00000394536 UBE2TQ9NPD8 197 aaPredicted RBP17.54■□□□□ 0.4
PCDH1-203ENST00000394536 INTS9Q9NV88 658 aaKnown RBP17.54■□□□□ 0.4
PCDH1-203ENST00000394536 hCG_1984214I3L0E3 225 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 DR1Q01658 176 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 ZNF713Q8N859 430 aaPredicted RBP17.53■□□□□ 0.4
PCDH1-203ENST00000394536 USP38Q8NB14 1042 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.53■□□□□ 0.4
PCDH1-203ENST00000394536 DAGLAQ9Y4D2 1042 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 ABCC6O95255 1503 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 K7ENM7 598 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 MEFVO15553 781 aaPredicted RBP17.53■□□□□ 0.4
PCDH1-203ENST00000394536 RPSAP08865 295 aaKnown RBP17.53■□□□□ 0.4
PCDH1-203ENST00000394536 FXR2P51116 673 aaKnown RBP eCLIP17.53■□□□□ 0.4
PCDH1-203ENST00000394536 HDLBPQ00341 1268 aaKnown RBP17.53■□□□□ 0.4
PCDH1-203ENST00000394536 NAA25Q14CX7 972 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 ZNF473Q8WTR7 871 aaKnown RBP17.53■□□□□ 0.4
PCDH1-203ENST00000394536 MLXIPLQ9NP71 852 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 FRMD3A2A2Y4 597 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 GMNCA6NCL1 334 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 RSPH10B2B2RC85 870 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 RSPH10BP0C881 870 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 CETN2P41208 172 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 CUL1Q13616 776 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 DRAP1Q14919 205 aaPredicted RBP17.53■□□□□ 0.4
PCDH1-203ENST00000394536 MCTP2Q6DN12 878 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 REEP2Q9BRK0 252 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 UBXN6Q9BZV1 441 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 USTQ9Y2C2 406 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 STK38LQ9Y2H1 464 aa17.53■□□□□ 0.4
PCDH1-203ENST00000394536 CASP4P49662 377 aa17.52■□□□□ 0.4
PCDH1-203ENST00000394536 CDK17Q00537 523 aa17.52■□□□□ 0.4
PCDH1-203ENST00000394536 TRIP13Q15645 432 aaPredicted RBP17.52■□□□□ 0.4
PCDH1-203ENST00000394536 ZKSCAN8Q15776 578 aaPredicted RBP17.52■□□□□ 0.4
PCDH1-203ENST00000394536 PHF20L1A8MW92 1017 aa17.52■□□□□ 0.4
PCDH1-203ENST00000394536 TAL1P17542 331 aaPredicted RBP17.52■□□□□ 0.4
PCDH1-203ENST00000394536 LMNB1P20700 586 aa17.52■□□□□ 0.4
PCDH1-203ENST00000394536 GALCP54803 685 aa17.52■□□□□ 0.4
PCDH1-203ENST00000394536 FAM133BQ5BKY9 247 aaKnown RBP17.52■□□□□ 0.4
PCDH1-203ENST00000394536 HIBCHQ6NVY1 386 aaPredicted RBP17.52■□□□□ 0.4
PCDH1-203ENST00000394536 CAPN12Q6ZSI9 719 aa17.52■□□□□ 0.4
PCDH1-203ENST00000394536 METTL13Q8N6R0 699 aa17.52■□□□□ 0.4
PCDH1-203ENST00000394536 EPN3Q9H201 632 aa17.52■□□□□ 0.4
PCDH1-203ENST00000394536 FAM114A2Q9NRY5 505 aa17.52■□□□□ 0.4
PCDH1-203ENST00000394536 CTNNA2P26232 953 aa17.52■□□□□ 0.39
PCDH1-203ENST00000394536 MYL7Q01449 175 aa17.52■□□□□ 0.39
PCDH1-203ENST00000394536 ZC2HC1CQ53FD0 456 aaPredicted RBP17.52■□□□□ 0.39
PCDH1-203ENST00000394536 PTF1AQ7RTS3 328 aa17.52■□□□□ 0.39
PCDH1-203ENST00000394536 SPATS2Q86XZ4 545 aaKnown RBP17.52■□□□□ 0.39
PCDH1-203ENST00000394536 TACO1Q9BSH4 297 aaKnown RBP17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms