RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ORC4O43929 436 aa20.84■□□□□ 0.93
USP48-201ENST00000308271 SEC24CP53992 1094 aa20.84■□□□□ 0.93
USP48-201ENST00000308271 TBX2Q13207 712 aaPredicted RBP20.84■□□□□ 0.93
USP48-201ENST00000308271 DHX34Q14147 1143 aaKnown RBP20.84■□□□□ 0.93
USP48-201ENST00000308271 LLGL1Q15334 1064 aa20.84■□□□□ 0.93
USP48-201ENST00000308271 HLFQ16534 295 aa20.84■□□□□ 0.93
USP48-201ENST00000308271 SEC16BQ96JE7 1060 aa20.84■□□□□ 0.93
USP48-201ENST00000308271 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.84■□□□□ 0.93
USP48-201ENST00000308271 STOML1Q9UBI4 398 aa20.84■□□□□ 0.93
USP48-201ENST00000308271 VIRMAQ69YN4 1812 aaKnown RBP20.83■□□□□ 0.93
USP48-201ENST00000308271 MEIS1O00470 390 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 MAP2K7O14733 419 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 POLR2MP0CAP2 368 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 GTF2IP78347 998 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 NR1H3Q13133 447 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 PLCB4Q15147 1175 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 FBXL16Q8N461 479 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 RNPC3Q96LT9 517 aaKnown RBP20.83■□□□□ 0.93
USP48-201ENST00000308271 ERGIC2Q96RQ1 377 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 SENP2Q9HC62 589 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 LEMD3Q9Y2U8 911 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 LMTK3Q96Q04 1460 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 PRLRP16471 622 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 ATP2B4P23634 1241 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 SRBD1Q8N5C6 995 aaKnown RBP20.83■□□□□ 0.93
USP48-201ENST00000308271 C7orf25Q9BPX7 421 aa20.83■□□□□ 0.93
USP48-201ENST00000308271 CRKLP46109 303 aaKnown RBP20.83■□□□□ 0.92
USP48-201ENST00000308271 CDKAL1Q5VV42 579 aa20.83■□□□□ 0.92
USP48-201ENST00000308271 PLA2G12BQ9BX93 195 aa20.83■□□□□ 0.92
USP48-201ENST00000308271 SNAP23O00161 211 aa20.83■□□□□ 0.92
USP48-201ENST00000308271 MYCLP12524 364 aaPredicted RBP20.83■□□□□ 0.92
USP48-201ENST00000308271 TCP10Q12799 353 aa20.83■□□□□ 0.92
USP48-201ENST00000308271 FAM81BQ96LP2 452 aa20.83■□□□□ 0.92
USP48-201ENST00000308271 TMEM206Q9H813 350 aa20.83■□□□□ 0.92
USP48-201ENST00000308271 DCP1AQ9NPI6 582 aaPredicted RBP20.83■□□□□ 0.92
USP48-201ENST00000308271 PNMA6FA0A0J9YX94 578 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 DLATP10515 647 aaKnown RBP20.82■□□□□ 0.92
USP48-201ENST00000308271 CAV1Q03135 178 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 CASC4Q6P4E1 433 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 NACC1Q96RE7 527 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 TMEM47Q9BQJ4 181 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 ECT2Q9H8V3 914 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 ANGPTL2Q9UKU9 493 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 NMT2O60551 498 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 FAM102BQ5T8I3 360 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 TEKT1Q969V4 418 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 SNX16P57768 344 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 C3orf20Q8ND61 904 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 NUF2Q9BZD4 464 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 ETNK1Q9HBU6 452 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 SLC40A1Q9NP59 571 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 AGTP01019 485 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 CD44P16070 742 aaKnown RBP20.82■□□□□ 0.92
USP48-201ENST00000308271 ANXA13P27216 316 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 MSH2P43246 934 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 MXI1P50539 228 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 UBE2SQ16763 222 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 NAALADL2Q58DX5 795 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 SUSD4Q5VX71 490 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 GRAMD1AQ96CP6 724 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 SGSM3Q96HU1 749 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 YIPF3Q9GZM5 350 aa20.82■□□□□ 0.92
USP48-201ENST00000308271 MRPL11Q9Y3B7 192 aaKnown RBP20.82■□□□□ 0.92
USP48-201ENST00000308271 ESRRAP11474 423 aaPredicted RBP20.81■□□□□ 0.92
USP48-201ENST00000308271 YWHAEP62258 255 aaKnown RBP20.81■□□□□ 0.92
USP48-201ENST00000308271 MKRN3Q13064 507 aaKnown RBP20.81■□□□□ 0.92
USP48-201ENST00000308271 SYNE4Q8N205 404 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 SLC17A8Q8NDX2 589 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 ACCSQ96QU6 501 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 POLD4Q9HCU8 107 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 CCNL1Q9UK58 526 aaPredicted RBP20.81■□□□□ 0.92
USP48-201ENST00000308271 NR3C1P04150 777 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 CYP2D6P10635 497 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 BRAFP15056 766 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 STK4Q13043 487 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 TRIP13Q15645 432 aaPredicted RBP20.81■□□□□ 0.92
USP48-201ENST00000308271 PPP1R2P3Q6NXS1 205 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 RFFLQ8WZ73 363 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 THOC1Q96FV9 657 aaKnown RBP20.81■□□□□ 0.92
USP48-201ENST00000308271 XPO6Q96QU8 1125 aaKnown RBP20.81■□□□□ 0.92
USP48-201ENST00000308271 PLAGL2Q9UPG8 496 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 SETD1BQ9UPS6 1966 aaKnown RBP20.81■□□□□ 0.92
USP48-201ENST00000308271 LOC102724428A0A0B4J2F2 783 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 H0YCG3 227 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 SIK1P57059 783 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 ICA1Q05084 483 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 FAM47EQ6ZV65 393 aa20.81■□□□□ 0.92
USP48-201ENST00000308271 MRPL47Q9HD33 250 aaKnown RBP20.81■□□□□ 0.92
USP48-201ENST00000308271 BSDC1Q9NW68 430 aaPredicted RBP20.81■□□□□ 0.92
USP48-201ENST00000308271 TPD52P55327 224 aaPredicted RBP20.8■□□□□ 0.92
USP48-201ENST00000308271 YWHAGP61981 247 aaKnown RBP eCLIP20.8■□□□□ 0.92
USP48-201ENST00000308271 CERKLQ49MI3 558 aaPredicted RBP20.8■□□□□ 0.92
USP48-201ENST00000308271 WDR11Q9BZH6 1224 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 ISCUQ9H1K1 167 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 SMARCAL1Q9NZC9 954 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 RASA4BC9J798 803 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 RASA4O43374 803 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 CDK8P49336 464 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 GPC5P78333 572 aa20.8■□□□□ 0.92
USP48-201ENST00000308271 RCN2Q14257 317 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms