RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 USP17L11C9JVI0 530 aa18.64■□□□□ 0.58
SHANK1-201ENST00000293441 USP17L18D6R9N7 530 aa18.64■□□□□ 0.58
SHANK1-201ENST00000293441 USP17L22D6RA61 530 aa18.64■□□□□ 0.58
SHANK1-201ENST00000293441 USP17L17D6RBQ6 530 aa18.64■□□□□ 0.58
SHANK1-201ENST00000293441 USP17L19D6RCP7 530 aa18.64■□□□□ 0.58
SHANK1-201ENST00000293441 USP17L20D6RJB6 530 aa18.64■□□□□ 0.58
SHANK1-201ENST00000293441 MSH2P43246 934 aa18.64■□□□□ 0.58
SHANK1-201ENST00000293441 IL1RL1Q01638 556 aa18.64■□□□□ 0.58
SHANK1-201ENST00000293441 USP17L24Q0WX57 530 aa18.64■□□□□ 0.58
SHANK1-201ENST00000293441 RESTQ13127 1097 aa18.64■□□□□ 0.58
SHANK1-201ENST00000293441 TWF2Q6IBS0 349 aaKnown RBP18.64■□□□□ 0.58
SHANK1-201ENST00000293441 USP17L6PQ6QN14 398 aa18.64■□□□□ 0.58
SHANK1-201ENST00000293441 ERICH1Q86X53 443 aa18.64■□□□□ 0.58
SHANK1-201ENST00000293441 PRDM15P57071 1507 aaPredicted RBP18.64■□□□□ 0.58
SHANK1-201ENST00000293441 PODNQ7Z5L7 613 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 CEP95Q96GE4 821 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 SPDYE1Q8NFV5 336 aaPredicted RBP18.64■□□□□ 0.57
SHANK1-201ENST00000293441 TDRD7Q8NHU6 1098 aaKnown RBP18.64■□□□□ 0.57
SHANK1-201ENST00000293441 FBXO40Q9UH90 709 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 MROH7-TTC4A0A0A0MT08 1334 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 LDHAP00338 332 aaKnown RBP18.64■□□□□ 0.57
SHANK1-201ENST00000293441 SIRT2Q8IXJ6 389 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 RCOR1Q9UKL0 485 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 PYCARDQ9ULZ3 195 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 PCDHA13Q9Y5I0 950 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 IFNAR2P48551 515 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 EFCAB13Q8IY85 973 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 UTYO14607 1347 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 PGRMC1O00264 195 aaKnown RBP18.64■□□□□ 0.57
SHANK1-201ENST00000293441 CLDN3O15551 220 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 IGKV5-2P06315 115 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 CYP19A1P11511 503 aaPredicted RBP18.64■□□□□ 0.57
SHANK1-201ENST00000293441 SPP2Q13103 211 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 ATP8A1Q9Y2Q0 1164 aa18.64■□□□□ 0.57
SHANK1-201ENST00000293441 PTCH1Q13635 1447 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 POTEMA6NI47 508 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 NECTIN1Q15223 517 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 LRGUKQ96M69 825 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 ABCC3O15438 1527 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 SOX5P35711 763 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 CLNS1AP54105 237 aaKnown RBP18.63■□□□□ 0.57
SHANK1-201ENST00000293441 MUM1Q2TAK8 710 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 SPZ1Q9BXG8 430 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 CIITAP33076 1130 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 TCP11X2Q5H9J9 407 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 ZNF667Q5HYK9 610 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 GBP7Q8N8V2 638 aaPredicted RBP18.63■□□□□ 0.57
SHANK1-201ENST00000293441 RNF146Q9NTX7 359 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 OVOS2A0A0G2JMS6 1433 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 OVOS2A0A0J9YW53 1432 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 OVOS2Q6IE36 1432 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 PSMA2P25787 234 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 KRT33BQ14525 404 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 CCDC38Q502W7 563 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 ARL6IP4Q66PJ3 421 aaKnown RBP18.63■□□□□ 0.57
SHANK1-201ENST00000293441 RCSD1Q6JBY9 416 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 HVCN1Q96D96 273 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 NDST4Q9H3R1 872 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 TMEM260Q9NX78 707 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 CDC23Q9UJX2 597 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 IL9RQ01113 521 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 LRRC63Q05C16 580 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 DEPDC1BQ8WUY9 529 aa18.63■□□□□ 0.57
SHANK1-201ENST00000293441 KCNQ2O43526 872 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 MAPK6Q16659 721 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 ZNF568Q3ZCX4 644 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 DYDC2Q96IM9 177 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 ZNF668Q96K58 619 aaPredicted RBP18.62■□□□□ 0.57
SHANK1-201ENST00000293441 MTRQ99707 1265 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 ZNF302Q9NR11 478 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 GJB4Q9NTQ9 266 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 RCN2Q14257 317 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 RHPN2Q8IUC4 686 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 CFAP61Q8NHU2 1237 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 TLK1Q9UKI8 766 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 SCN4BQ8IWT1 228 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 ALKBH8Q96BT7 664 aaKnown RBP18.62■□□□□ 0.57
SHANK1-201ENST00000293441 FAM167AQ96KS9 214 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 TET3O43151 1660 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 SERPINB6P35237 376 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 PHKA2P46019 1235 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 IRX4P78413 519 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 JRKLQ9Y4A0 524 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 SART1O43290 800 aaKnown RBP18.62■□□□□ 0.57
SHANK1-201ENST00000293441 ADRA2BP18089 450 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 SESN3P58005 492 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 ARHGAP31Q2M1Z3 1444 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 PPP4R3CPQ6ZMV5 832 aa18.62■□□□□ 0.57
SHANK1-201ENST00000293441 OLA1Q9NTK5 396 aaKnown RBP18.62■□□□□ 0.57
SHANK1-201ENST00000293441 A0A1B0GUA9 196 aa18.61■□□□□ 0.57
SHANK1-201ENST00000293441 PFKFB3Q16875 520 aaPredicted RBP18.61■□□□□ 0.57
SHANK1-201ENST00000293441 C1orf228Q6PIY5 440 aa18.61■□□□□ 0.57
SHANK1-201ENST00000293441 ELMOD1Q8N336 334 aa18.61■□□□□ 0.57
SHANK1-201ENST00000293441 NSUN6Q8TEA1 469 aaKnown RBP18.61■□□□□ 0.57
SHANK1-201ENST00000293441 C10orf76Q5T2E6 689 aa18.61■□□□□ 0.57
SHANK1-201ENST00000293441 INTS9Q9NV88 658 aaKnown RBP18.61■□□□□ 0.57
SHANK1-201ENST00000293441 STX1BP61266 288 aa18.61■□□□□ 0.57
SHANK1-201ENST00000293441 NGRNQ9NPE2 291 aaKnown RBP18.61■□□□□ 0.57
SHANK1-201ENST00000293441 TBK1Q9UHD2 729 aa18.61■□□□□ 0.57
SHANK1-201ENST00000293441 ADCY10Q96PN6 1610 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms