RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 CACTINQ8WUQ7 758 aaKnown RBP20.1■□□□□ 0.81
VIM-201ENST00000224237 EFCC1Q9HA90 598 aa20.1■□□□□ 0.81
VIM-201ENST00000224237 OLFML3Q9NRN5 406 aa20.1■□□□□ 0.81
VIM-201ENST00000224237 DNAJC25-GNG10A0A024R161 153 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 RSPH10B2B2RC85 870 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 DKC1O60832 514 aaKnown RBP eCLIP20.09■□□□□ 0.81
VIM-201ENST00000224237 RSPH10BP0C881 870 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 GUCY2CP25092 1073 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 YWHABP31946 246 aaKnown RBP20.09■□□□□ 0.81
VIM-201ENST00000224237 RASAL3Q86YV0 1011 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 SCFD1Q8WVM8 642 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 FGFBP2Q9BYJ0 223 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 BCAS3Q9H6U6 928 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 PARVGQ9HBI0 331 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 N4BP3O15049 544 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 RARRES1P49788 294 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 ZNF157P51786 506 aaPredicted RBP20.09■□□□□ 0.81
VIM-201ENST00000224237 CREBRFQ8IUR6 639 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 CCDC43Q96MW1 224 aaKnown RBP20.09■□□□□ 0.81
VIM-201ENST00000224237 SEL1LQ9UBV2 794 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 DOCK5Q9H7D0 1870 aa20.09■□□□□ 0.81
VIM-201ENST00000224237 LOC102724159A0A0B4J2E5 919 aa20.08■□□□□ 0.81
VIM-201ENST00000224237 ZNF500O60304 480 aaPredicted RBP20.08■□□□□ 0.81
VIM-201ENST00000224237 PSAPP07602 524 aa20.08■□□□□ 0.81
VIM-201ENST00000224237 ZNF131P52739 623 aa20.08■□□□□ 0.81
VIM-201ENST00000224237 LRMPQ12912 555 aa20.08■□□□□ 0.81
VIM-201ENST00000224237 PWP2Q15269 919 aaKnown RBP20.08■□□□□ 0.81
VIM-201ENST00000224237 UGCGQ16739 394 aa20.08■□□□□ 0.81
VIM-201ENST00000224237 ZCWPW2Q504Y3 356 aa20.08■□□□□ 0.81
VIM-201ENST00000224237 PADI6Q6TGC4 694 aa20.08■□□□□ 0.81
VIM-201ENST00000224237 SEPT14Q6ZU15 432 aa20.08■□□□□ 0.81
VIM-201ENST00000224237 SAPCD2Q86UD0 394 aa20.08■□□□□ 0.81
VIM-201ENST00000224237 ATP6V0A1Q93050 837 aa20.08■□□□□ 0.81
VIM-201ENST00000224237 CNOT6LQ96LI5 555 aaKnown RBP20.08■□□□□ 0.81
VIM-201ENST00000224237 FGD4Q96M96 766 aa20.08■□□□□ 0.81
VIM-201ENST00000224237 PARK7Q99497 189 aaKnown RBP20.08■□□□□ 0.81
VIM-201ENST00000224237 TAB2Q9NYJ8 693 aa20.08■□□□□ 0.81
VIM-201ENST00000224237 PASKQ96RG2 1323 aa20.08■□□□□ 0.8
VIM-201ENST00000224237 TEX33O43247 280 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 SORBS3O60504 671 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 SFPQP23246 707 aaKnown RBP eCLIP20.07■□□□□ 0.8
VIM-201ENST00000224237 PPP4R3CPQ6ZMV5 832 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 EPM2AIP1Q7L775 607 aaPredicted RBP20.07■□□□□ 0.8
VIM-201ENST00000224237 VPS16Q9H269 839 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 MRPL44Q9H9J2 332 aaKnown RBP20.07■□□□□ 0.8
VIM-201ENST00000224237 GPBP1L1Q9HC44 474 aaPredicted RBP20.07■□□□□ 0.8
VIM-201ENST00000224237 ANKEF1Q9NU02 776 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 TELO2Q9Y4R8 837 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 TPM2P07951 284 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 TGFB3P10600 412 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 PBX1P40424 430 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 ACTR2P61160 394 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 ARID5BQ14865 1188 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 MYCT1Q8N699 235 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 KCTD10Q9H3F6 313 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 MORF4L1Q9UBU8 362 aa20.07■□□□□ 0.8
VIM-201ENST00000224237 WDR81Q562E7 1941 aa20.06■□□□□ 0.8
VIM-201ENST00000224237 CASP5P51878 434 aa20.06■□□□□ 0.8
VIM-201ENST00000224237 FKBP3Q00688 224 aaKnown RBP20.06■□□□□ 0.8
VIM-201ENST00000224237 SP2Q02086 613 aa20.06■□□□□ 0.8
VIM-201ENST00000224237 BMT2Q1RMZ1 405 aa20.06■□□□□ 0.8
VIM-201ENST00000224237 MIS18BP1Q6P0N0 1132 aa20.06■□□□□ 0.8
VIM-201ENST00000224237 ARMCX5Q6P1M9 558 aa20.06■□□□□ 0.8
VIM-201ENST00000224237 NELFCDQ8IXH7 590 aa20.06■□□□□ 0.8
VIM-201ENST00000224237 TIPINQ9BVW5 301 aa20.06■□□□□ 0.8
VIM-201ENST00000224237 GABBR1Q9UBS5 961 aa20.06■□□□□ 0.8
VIM-201ENST00000224237 ITIH6Q6UXX5 1313 aa20.06■□□□□ 0.8
VIM-201ENST00000224237 EIF3DO15371 548 aaKnown RBP eCLIP20.05■□□□□ 0.8
VIM-201ENST00000224237 NRDCO43847 1150 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 GCNT3O95395 438 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 UBA1P22314 1058 aaKnown RBP20.05■□□□□ 0.8
VIM-201ENST00000224237 TBX2Q13207 712 aaPredicted RBP20.05■□□□□ 0.8
VIM-201ENST00000224237 PTPN21Q16825 1174 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 ABHD15Q6UXT9 468 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 LRRC55Q6ZSA7 311 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 CYFIP1Q7L576 1253 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 TUBGCP2Q9BSJ2 902 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 ZNFX1Q9P2E3 1918 aaKnown RBP20.05■□□□□ 0.8
VIM-201ENST00000224237 SFI1A8K8P3 1242 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 KIF3CO14782 793 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 NEDD9Q14511 834 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 KNOP1Q1ED39 458 aaKnown RBP20.05■□□□□ 0.8
VIM-201ENST00000224237 OTUD6AQ7L8S5 288 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 EEPD1Q7L9B9 569 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 KIAA1524Q8TCG1 905 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 EEF2KMTQ96G04 330 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 PYCARDQ9ULZ3 195 aa20.05■□□□□ 0.8
VIM-201ENST00000224237 MYH11P35749 1972 aa20.04■□□□□ 0.8
VIM-201ENST00000224237 UBE4BO95155 1302 aa20.04■□□□□ 0.8
VIM-201ENST00000224237 LGALS16A8MUM7 142 aa20.04■□□□□ 0.8
VIM-201ENST00000224237 IGF2BP3O00425 579 aaKnown RBP eCLIP20.04■□□□□ 0.8
VIM-201ENST00000224237 HIP1RO75146 1068 aa20.04■□□□□ 0.8
VIM-201ENST00000224237 SUPT20HL2P0C7V6 817 aa20.04■□□□□ 0.8
VIM-201ENST00000224237 MYBP10242 640 aa20.04■□□□□ 0.8
VIM-201ENST00000224237 PRKCSHP14314 528 aaPredicted RBP20.04■□□□□ 0.8
VIM-201ENST00000224237 MTIF2P46199 727 aaKnown RBP20.04■□□□□ 0.8
VIM-201ENST00000224237 SP4Q02446 784 aa20.04■□□□□ 0.8
VIM-201ENST00000224237 EDRF1Q3B7T1 1238 aa20.04■□□□□ 0.8
VIM-201ENST00000224237 SWSAP1Q6NVH7 229 aa20.04■□□□□ 0.8
VIM-201ENST00000224237 RGMBQ6NW40 437 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms