RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 SMIM10L2BP0DMW5 78 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 MBTPS1Q14703 1052 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 PLCB4Q15147 1175 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 IL17AQ16552 155 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 MCTP2Q6DN12 878 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 PPP4R3AQ6IN85 833 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 CHRDL2Q6WN34 429 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 RUFY4Q6ZNE9 571 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 CDHR1Q96JP9 859 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 MTMR9Q96QG7 549 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 CEP89Q96ST8 783 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 PPP1R12CQ9BZL4 782 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 TUT1Q9H6E5 874 aaKnown RBP10.45□□□□□ -0.74
VPS35-206ENST00000565228 SETD4Q9NVD3 440 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 PCDHB6Q9Y5E3 794 aa10.45□□□□□ -0.74
VPS35-206ENST00000565228 EMSYQ7Z589 1322 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 NOP56O00567 594 aaKnown RBP10.44□□□□□ -0.74
VPS35-206ENST00000565228 KPNA6O60684 536 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 ATP2B1P20020 1258 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 SETQ01105 290 aaPredicted RBP10.44□□□□□ -0.74
VPS35-206ENST00000565228 PKP1Q13835 747 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 ZNF174Q15697 407 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 FAM47CQ5HY64 1035 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 C9orf50Q5SZB4 431 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 SWSAP1Q6NVH7 229 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 FAM173BQ6P4H8 233 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 NOSTRINQ8IVI9 506 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 FAM184AQ8NB25 1140 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 LMBR1Q8WVP7 490 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 SCLYQ96I15 445 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 FOXP1Q9H334 677 aaPredicted RBP10.44□□□□□ -0.74
VPS35-206ENST00000565228 TMEM39AQ9NV64 488 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 SMC3Q9UQE7 1217 aa10.44□□□□□ -0.74
VPS35-206ENST00000565228 IGSF9BQ9UPX0 1349 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 A0A087WWV3 80 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 ZBTB39O15060 712 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 CHMP2AO43633 222 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 TIMP1P01033 207 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 ACRP10323 421 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 CSF2RAP15509 400 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 XBP1P17861 261 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 CCL23P55773 120 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 PTGISQ16647 500 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 LRCH2Q5VUJ6 765 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 ZNF746Q6NUN9 644 aaPredicted RBP10.43□□□□□ -0.74
VPS35-206ENST00000565228 ZNF579Q8NAF0 562 aaKnown RBP10.43□□□□□ -0.74
VPS35-206ENST00000565228 SPRYD3Q8NCJ5 442 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 GIMAP8Q8ND71 665 aaPredicted RBP10.43□□□□□ -0.74
VPS35-206ENST00000565228 AFAP1L1Q8TED9 768 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 RIT2Q99578 217 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 SH2D3AQ9BRG2 576 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 SDF4Q9BRK5 362 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 FTOQ9C0B1 505 aaKnown RBP eCLIP10.43□□□□□ -0.74
VPS35-206ENST00000565228 GABBR1Q9UBS5 961 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 MTMR6Q9Y217 621 aa10.43□□□□□ -0.74
VPS35-206ENST00000565228 MAFBQ9Y5Q3 323 aaPredicted RBP10.43□□□□□ -0.74
VPS35-206ENST00000565228 PRUNE2Q8WUY3 3088 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 DCDC2CA8MYV0 355 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 SOX1O00570 391 aaPredicted RBP10.42□□□□□ -0.74
VPS35-206ENST00000565228 INSRRP14616 1297 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 SYT1P21579 422 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 MCM7P33993 719 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 STAT5BP51692 787 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 PTPN11Q06124 597 aaPredicted RBP10.42□□□□□ -0.74
VPS35-206ENST00000565228 RESTQ13127 1097 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 PPP2R5CQ13362 524 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 TTC38Q5R3I4 469 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 LARP1BQ659C4 914 aaKnown RBP10.42□□□□□ -0.74
VPS35-206ENST00000565228 PLPPR4Q7Z2D5 763 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 TRMT1LQ7Z2T5 733 aaKnown RBP10.42□□□□□ -0.74
VPS35-206ENST00000565228 FERMT3Q86UX7 667 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 SERINC5Q86VE9 423 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 IL27Q8NEV9 243 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 INTS4Q96HW7 963 aaKnown RBP10.42□□□□□ -0.74
VPS35-206ENST00000565228 CHAMP1Q96JM3 812 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 DISC1Q9NRI5 854 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 TBC1D22BQ9NU19 505 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 RGL1Q9NZL6 768 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 NR2E3Q9Y5X4 410 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 MYH15Q9Y2K3 1946 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 ARID2Q68CP9 1835 aa10.42□□□□□ -0.74
VPS35-206ENST00000565228 MBLAC1A4D2B0 266 aaPredicted RBP10.41□□□□□ -0.74
VPS35-206ENST00000565228 POTEMA6NI47 508 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 GAS7O60861 476 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 NBNO60934 754 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 IQCF3P0C7M6 154 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 GRIN1Q05586 938 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 RBL2Q08999 1139 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 TRIM29Q14134 588 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 SHHQ15465 462 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 GRIK4Q16099 956 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 ECM1Q16610 540 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 BRDTQ58F21 947 aaPredicted RBP10.41□□□□□ -0.74
VPS35-206ENST00000565228 ZNF618Q5T7W0 954 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 FAM109BQ6ICB4 259 aaPredicted RBP10.41□□□□□ -0.74
VPS35-206ENST00000565228 MFSD5Q6N075 450 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 LINC01465Q8N7H1 131 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 C7orf31Q8N865 590 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 BANK1Q8NDB2 785 aa10.41□□□□□ -0.74
VPS35-206ENST00000565228 TEKT3Q9BXF9 490 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms