RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 KRT40Q6A162 431 aa22.24■■□□□ 1.15
LIME1-201ENST00000309546 PLA2G4DQ86XP0 818 aa22.24■■□□□ 1.15
LIME1-201ENST00000309546 REXO1Q8N1G1 1221 aaKnown RBP22.24■■□□□ 1.15
LIME1-201ENST00000309546 FBXL16Q8N461 479 aa22.24■■□□□ 1.15
LIME1-201ENST00000309546 UIMC1Q96RL1 719 aa22.24■■□□□ 1.15
LIME1-201ENST00000309546 ZMYND12Q9H0C1 365 aa22.24■■□□□ 1.15
LIME1-201ENST00000309546 NCOA5Q9HCD5 579 aaKnown RBP22.24■■□□□ 1.15
LIME1-201ENST00000309546 MTCH2Q9Y6C9 303 aa22.24■■□□□ 1.15
LIME1-201ENST00000309546 PRRC2BQ5JSZ5 2229 aaKnown RBP22.24■■□□□ 1.15
LIME1-201ENST00000309546 CUL9Q8IWT3 2517 aa22.23■■□□□ 1.15
LIME1-201ENST00000309546 ESYT2A0FGR8 921 aa22.23■■□□□ 1.15
LIME1-201ENST00000309546 MEIS1O00470 390 aa22.23■■□□□ 1.15
LIME1-201ENST00000309546 ADAMTS3O15072 1205 aa22.23■■□□□ 1.15
LIME1-201ENST00000309546 GRB10Q13322 594 aa22.23■■□□□ 1.15
LIME1-201ENST00000309546 FAM26DQ5JW98 314 aa22.23■■□□□ 1.15
LIME1-201ENST00000309546 RUFY3Q7L099 469 aa22.23■■□□□ 1.15
LIME1-201ENST00000309546 RSPH3Q86UC2 560 aa22.23■■□□□ 1.15
LIME1-201ENST00000309546 GDPD5Q8WTR4 605 aa22.23■■□□□ 1.15
LIME1-201ENST00000309546 DNAJB3Q8WWF6 145 aa22.23■■□□□ 1.15
LIME1-201ENST00000309546 ZBTB10Q96DT7 871 aa22.23■■□□□ 1.15
LIME1-201ENST00000309546 IFIH1Q9BYX4 1025 aaKnown RBP22.23■■□□□ 1.15
LIME1-201ENST00000309546 TSPYL2Q9H2G4 693 aaPredicted RBP22.23■■□□□ 1.15
LIME1-201ENST00000309546 LINC01553A4QN01 128 aa22.22■■□□□ 1.15
LIME1-201ENST00000309546 FAM86B1E9PN63 330 aa22.22■■□□□ 1.15
LIME1-201ENST00000309546 CHRNA1P02708 482 aa22.22■■□□□ 1.15
LIME1-201ENST00000309546 FAM86B2P0C5J1 330 aa22.22■■□□□ 1.15
LIME1-201ENST00000309546 GHRP10912 638 aa22.22■■□□□ 1.15
LIME1-201ENST00000309546 INSRRP14616 1297 aa22.22■■□□□ 1.15
LIME1-201ENST00000309546 PDIA3P30101 505 aaKnown RBP22.22■■□□□ 1.15
LIME1-201ENST00000309546 STAT5BP51692 787 aa22.22■■□□□ 1.15
LIME1-201ENST00000309546 MKRN4PQ13434 485 aaPredicted RBP22.22■■□□□ 1.15
LIME1-201ENST00000309546 CCDC148Q8NFR7 591 aa22.22■■□□□ 1.15
LIME1-201ENST00000309546 RASGRP4Q8TDF6 673 aa22.22■■□□□ 1.15
LIME1-201ENST00000309546 SYMPKQ92797 1274 aaKnown RBP22.22■■□□□ 1.15
LIME1-201ENST00000309546 APBB2Q92870 758 aa22.22■■□□□ 1.15
LIME1-201ENST00000309546 RNF26Q9BY78 433 aaPredicted RBP22.22■■□□□ 1.15
LIME1-201ENST00000309546 FAM49AQ9H0Q0 323 aaPredicted RBP22.22■■□□□ 1.15
LIME1-201ENST00000309546 INSL6Q9Y581 213 aa22.22■■□□□ 1.15
LIME1-201ENST00000309546 MBLAC1A4D2B0 266 aaPredicted RBP22.21■■□□□ 1.15
LIME1-201ENST00000309546 RRN3P2A6NIE6 340 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 BACH1O14867 736 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 UPP2O95045 317 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 GNA11P29992 359 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 TOB2Q14106 344 aaPredicted RBP22.21■■□□□ 1.15
LIME1-201ENST00000309546 PLCB4Q15147 1175 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 NTRK3Q16288 839 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 MARCH8Q5T0T0 291 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 NIPA1Q7RTP0 329 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 RPAINQ86UA6 219 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 TRAPPC12Q8WVT3 735 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 ATXN2LQ8WWM7 1075 aaKnown RBP22.21■■□□□ 1.15
LIME1-201ENST00000309546 TGS1Q96RS0 853 aaKnown RBP22.21■■□□□ 1.15
LIME1-201ENST00000309546 ZSWIM6Q9HCJ5 1215 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 VPS54Q9P1Q0 977 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 CYP46A1Q9Y6A2 500 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 CDY2AQ9Y6F7 541 aa22.21■■□□□ 1.15
LIME1-201ENST00000309546 LOXHD1Q8IVV2 1947 aa22.2■■□□□ 1.14
LIME1-201ENST00000309546 EPB41L2O43491 1005 aaKnown RBP22.2■■□□□ 1.14
LIME1-201ENST00000309546 IFNAR1P17181 557 aa22.2■■□□□ 1.14
LIME1-201ENST00000309546 MGAT3Q09327 533 aa22.2■■□□□ 1.14
LIME1-201ENST00000309546 MCTP2Q6DN12 878 aa22.2■■□□□ 1.14
LIME1-201ENST00000309546 PLPPR4Q7Z2D5 763 aa22.2■■□□□ 1.14
LIME1-201ENST00000309546 TNPO1Q92973 898 aaKnown RBP22.2■■□□□ 1.14
LIME1-201ENST00000309546 YME1L1Q96TA2 773 aa22.2■■□□□ 1.14
LIME1-201ENST00000309546 LARP6Q9BRS8 491 aaKnown RBP22.2■■□□□ 1.14
LIME1-201ENST00000309546 UPF3BQ9BZI7 483 aaKnown RBP22.2■■□□□ 1.14
LIME1-201ENST00000309546 IGLV3-22A0A075B6J6 115 aa22.19■■□□□ 1.14
LIME1-201ENST00000309546 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.19■■□□□ 1.14
LIME1-201ENST00000309546 CCNE2O96020 404 aa22.19■■□□□ 1.14
LIME1-201ENST00000309546 CYP3A4P08684 503 aa22.19■■□□□ 1.14
LIME1-201ENST00000309546 POU3F3P20264 500 aaPredicted RBP22.19■■□□□ 1.14
LIME1-201ENST00000309546 ERVK-21P61565 698 aa22.19■■□□□ 1.14
LIME1-201ENST00000309546 MRPS5P82675 430 aaKnown RBP22.19■■□□□ 1.14
LIME1-201ENST00000309546 MRPS6P82932 125 aaKnown RBP22.19■■□□□ 1.14
LIME1-201ENST00000309546 BICD2Q8TD16 824 aa22.19■■□□□ 1.14
LIME1-201ENST00000309546 CRYGNQ8WXF5 182 aa22.19■■□□□ 1.14
LIME1-201ENST00000309546 ASB2Q96Q27 587 aa22.19■■□□□ 1.14
LIME1-201ENST00000309546 NLRC5Q86WI3 1866 aa22.19■■□□□ 1.14
LIME1-201ENST00000309546 VCANP13611 3396 aa22.19■■□□□ 1.14
LIME1-201ENST00000309546 MYH9P35579 1960 aaKnown RBP22.18■■□□□ 1.14
LIME1-201ENST00000309546 POTEB3A0JP26 581 aa22.18■■□□□ 1.14
LIME1-201ENST00000309546 IPO5O00410 1097 aaKnown RBP22.18■■□□□ 1.14
LIME1-201ENST00000309546 LPXNO60711 386 aa22.18■■□□□ 1.14
LIME1-201ENST00000309546 EVCP57679 992 aa22.18■■□□□ 1.14
LIME1-201ENST00000309546 HTRA4P83105 476 aaPredicted RBP22.18■■□□□ 1.14
LIME1-201ENST00000309546 SETQ01105 290 aaPredicted RBP22.18■■□□□ 1.14
LIME1-201ENST00000309546 TMEM62Q0P6H9 643 aa22.18■■□□□ 1.14
LIME1-201ENST00000309546 LPIN1Q14693 890 aa22.18■■□□□ 1.14
LIME1-201ENST00000309546 PRR16Q569H4 304 aa22.18■■□□□ 1.14
LIME1-201ENST00000309546 FAM160B1Q5W0V3 765 aa22.18■■□□□ 1.14
LIME1-201ENST00000309546 POTEBQ6S5H4 581 aa22.18■■□□□ 1.14
LIME1-201ENST00000309546 TRIM22Q8IYM9 498 aa22.18■■□□□ 1.14
LIME1-201ENST00000309546 IL27Q8NEV9 243 aa22.18■■□□□ 1.14
LIME1-201ENST00000309546 TOP1MTQ969P6 601 aa22.18■■□□□ 1.14
LIME1-201ENST00000309546 ZNF577Q9BSK1 485 aa22.18■■□□□ 1.14
LIME1-201ENST00000309546 SUGCTQ9HAC7 445 aa22.18■■□□□ 1.14
LIME1-201ENST00000309546 M0QZ92 97 aa22.17■■□□□ 1.14
LIME1-201ENST00000309546 CPLX1O14810 134 aa22.17■■□□□ 1.14
LIME1-201ENST00000309546 ATG7O95352 703 aa22.17■■□□□ 1.14
LIME1-201ENST00000309546 STK3Q13188 491 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms