RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 RUFY4Q6ZNE9 571 aa20.33■□□□□ 0.85
HDDC3-205ENST00000559898 PCYT2Q99447 389 aa20.33■□□□□ 0.85
HDDC3-205ENST00000559898 USP26Q9BXU7 913 aa20.33■□□□□ 0.85
HDDC3-205ENST00000559898 VCANP13611 3396 aa20.32■□□□□ 0.84
HDDC3-205ENST00000559898 KAT6AQ92794 2004 aa20.32■□□□□ 0.84
HDDC3-205ENST00000559898 COL4A4P53420 1690 aaPredicted RBP20.32■□□□□ 0.84
HDDC3-205ENST00000559898 IGFBP4P22692 258 aa20.32■□□□□ 0.84
HDDC3-205ENST00000559898 CLK2P49760 499 aaKnown RBP20.32■□□□□ 0.84
HDDC3-205ENST00000559898 METAP2P50579 478 aaKnown RBP eCLIP20.32■□□□□ 0.84
HDDC3-205ENST00000559898 MTMR1Q13613 665 aa20.32■□□□□ 0.84
HDDC3-205ENST00000559898 CNKSR3Q6P9H4 555 aa20.32■□□□□ 0.84
HDDC3-205ENST00000559898 BLOC1S2Q6QNY1 142 aa20.32■□□□□ 0.84
HDDC3-205ENST00000559898 LMBR1Q8WVP7 490 aa20.32■□□□□ 0.84
HDDC3-205ENST00000559898 PHKBQ93100 1093 aa20.32■□□□□ 0.84
HDDC3-205ENST00000559898 SLC9A7Q96T83 725 aa20.32■□□□□ 0.84
HDDC3-205ENST00000559898 ANO3Q9BYT9 981 aa20.32■□□□□ 0.84
HDDC3-205ENST00000559898 BARHL2Q9NY43 387 aa20.32■□□□□ 0.84
HDDC3-205ENST00000559898 DTNBO60941 627 aa20.31■□□□□ 0.84
HDDC3-205ENST00000559898 ADCY7P51828 1080 aa20.31■□□□□ 0.84
HDDC3-205ENST00000559898 TAP1Q03518 808 aa20.31■□□□□ 0.84
HDDC3-205ENST00000559898 ITGB3BPQ13352 177 aaPredicted RBP20.31■□□□□ 0.84
HDDC3-205ENST00000559898 MKRN4PQ13434 485 aaPredicted RBP20.31■□□□□ 0.84
HDDC3-205ENST00000559898 JAKMIP3Q5VZ66 844 aa20.31■□□□□ 0.84
HDDC3-205ENST00000559898 FAM117BQ6P1L5 589 aa20.31■□□□□ 0.84
HDDC3-205ENST00000559898 DBF4BQ8NFT6 615 aa20.31■□□□□ 0.84
HDDC3-205ENST00000559898 GAS2L1Q99501 681 aaPredicted RBP20.31■□□□□ 0.84
HDDC3-205ENST00000559898 MXRA8Q9BRK3 442 aa20.31■□□□□ 0.84
HDDC3-205ENST00000559898 NCOA5Q9HCD5 579 aaKnown RBP20.31■□□□□ 0.84
HDDC3-205ENST00000559898 SPTBN5Q9NRC6 3674 aaKnown RBP20.31■□□□□ 0.84
HDDC3-205ENST00000559898 TRANK1O15050 2925 aa20.3■□□□□ 0.84
HDDC3-205ENST00000559898 RSPH10B2B2RC85 870 aa20.3■□□□□ 0.84
HDDC3-205ENST00000559898 RSPH10BP0C881 870 aa20.3■□□□□ 0.84
HDDC3-205ENST00000559898 ARHGAP4P98171 946 aa20.3■□□□□ 0.84
HDDC3-205ENST00000559898 FGD1P98174 961 aa20.3■□□□□ 0.84
HDDC3-205ENST00000559898 TOB2Q14106 344 aaPredicted RBP20.3■□□□□ 0.84
HDDC3-205ENST00000559898 NTRK3Q16288 839 aa20.3■□□□□ 0.84
HDDC3-205ENST00000559898 PFKFB3Q16875 520 aaPredicted RBP20.3■□□□□ 0.84
HDDC3-205ENST00000559898 AGXT2Q9BYV1 514 aa20.3■□□□□ 0.84
HDDC3-205ENST00000559898 KCNH7Q9NS40 1196 aa20.3■□□□□ 0.84
HDDC3-205ENST00000559898 LGR5O75473 907 aa20.29■□□□□ 0.84
HDDC3-205ENST00000559898 BAIAP3O94812 1187 aa20.29■□□□□ 0.84
HDDC3-205ENST00000559898 HMGB1P09429 215 aaKnown RBP20.29■□□□□ 0.84
HDDC3-205ENST00000559898 CCT2P78371 535 aaKnown RBP20.29■□□□□ 0.84
HDDC3-205ENST00000559898 PPP1R18Q6NYC8 613 aa20.29■□□□□ 0.84
HDDC3-205ENST00000559898 PHOSPHO2Q8TCD6 241 aa20.29■□□□□ 0.84
HDDC3-205ENST00000559898 RASGRP4Q8TDF6 673 aa20.29■□□□□ 0.84
HDDC3-205ENST00000559898 SEPT1Q8WYJ6 367 aa20.29■□□□□ 0.84
HDDC3-205ENST00000559898 NID2Q14112 1375 aa20.29■□□□□ 0.84
HDDC3-205ENST00000559898 SCG2P13521 617 aa20.28■□□□□ 0.84
HDDC3-205ENST00000559898 KCNJ6P48051 423 aa20.28■□□□□ 0.84
HDDC3-205ENST00000559898 MARCH8Q5T0T0 291 aa20.28■□□□□ 0.84
HDDC3-205ENST00000559898 AGO4Q9HCK5 861 aaKnown RBP20.28■□□□□ 0.84
HDDC3-205ENST00000559898 LOXHD1Q8IVV2 1947 aa20.27■□□□□ 0.84
HDDC3-205ENST00000559898 FAM86B1E9PN63 330 aa20.27■□□□□ 0.84
HDDC3-205ENST00000559898 EDIL3O43854 480 aa20.27■□□□□ 0.84
HDDC3-205ENST00000559898 TLL1O43897 1013 aa20.27■□□□□ 0.84
HDDC3-205ENST00000559898 FAM86B2P0C5J1 330 aa20.27■□□□□ 0.84
HDDC3-205ENST00000559898 PDIA3P30101 505 aaKnown RBP20.27■□□□□ 0.84
HDDC3-205ENST00000559898 SREBF1P36956 1147 aa20.27■□□□□ 0.84
HDDC3-205ENST00000559898 RCAN1P53805 252 aa20.27■□□□□ 0.84
HDDC3-205ENST00000559898 MICALL1Q8N3F8 863 aa20.27■□□□□ 0.84
HDDC3-205ENST00000559898 TRAPPC12Q8WVT3 735 aa20.27■□□□□ 0.84
HDDC3-205ENST00000559898 ARNTL2Q8WYA1 636 aa20.27■□□□□ 0.84
HDDC3-205ENST00000559898 DDX39AO00148 427 aaKnown RBP20.26■□□□□ 0.83
HDDC3-205ENST00000559898 PRPF3O43395 683 aaKnown RBP20.26■□□□□ 0.83
HDDC3-205ENST00000559898 CCNE2O96020 404 aa20.26■□□□□ 0.83
HDDC3-205ENST00000559898 CHRNA1P02708 482 aa20.26■□□□□ 0.83
HDDC3-205ENST00000559898 IGBP1P78318 339 aa20.26■□□□□ 0.83
HDDC3-205ENST00000559898 GRIK4Q16099 956 aa20.26■□□□□ 0.83
HDDC3-205ENST00000559898 CEP55Q53EZ4 464 aa20.26■□□□□ 0.83
HDDC3-205ENST00000559898 PLEKHG4Q58EX7 1191 aa20.26■□□□□ 0.83
HDDC3-205ENST00000559898 GIMAP8Q8ND71 665 aaPredicted RBP20.26■□□□□ 0.83
HDDC3-205ENST00000559898 CRYGNQ8WXF5 182 aa20.26■□□□□ 0.83
HDDC3-205ENST00000559898 CDHR1Q96JP9 859 aa20.26■□□□□ 0.83
HDDC3-205ENST00000559898 UPF3BQ9BZI7 483 aaKnown RBP20.26■□□□□ 0.83
HDDC3-205ENST00000559898 JPH1Q9HDC5 661 aaPredicted RBP20.26■□□□□ 0.83
HDDC3-205ENST00000559898 SLC9A2Q9UBY0 812 aa20.26■□□□□ 0.83
HDDC3-205ENST00000559898 ZNF215Q9UL58 517 aaPredicted RBP20.26■□□□□ 0.83
HDDC3-205ENST00000559898 PRRC2BQ5JSZ5 2229 aaKnown RBP20.25■□□□□ 0.83
HDDC3-205ENST00000559898 IGLV3-22A0A075B6J6 115 aa20.25■□□□□ 0.83
HDDC3-205ENST00000559898 ABHD14A-ACY1A0A1B0GW23 586 aa20.25■□□□□ 0.83
HDDC3-205ENST00000559898 MEIS1O00470 390 aa20.25■□□□□ 0.83
HDDC3-205ENST00000559898 GJB5O95377 273 aa20.25■□□□□ 0.83
HDDC3-205ENST00000559898 ACTR2P61160 394 aa20.25■□□□□ 0.83
HDDC3-205ENST00000559898 PPFIA1Q13136 1202 aa20.25■□□□□ 0.83
HDDC3-205ENST00000559898 IKBKEQ14164 716 aa20.25■□□□□ 0.83
HDDC3-205ENST00000559898 RUFY3Q7L099 469 aa20.25■□□□□ 0.83
HDDC3-205ENST00000559898 FBXL16Q8N461 479 aa20.25■□□□□ 0.83
HDDC3-205ENST00000559898 GLG1Q92896 1179 aa20.25■□□□□ 0.83
HDDC3-205ENST00000559898 SLC26A6Q9BXS9 759 aa20.25■□□□□ 0.83
HDDC3-205ENST00000559898 ZSWIM6Q9HCJ5 1215 aa20.25■□□□□ 0.83
HDDC3-205ENST00000559898 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.24■□□□□ 0.83
HDDC3-205ENST00000559898 DHX15O43143 795 aaKnown RBP20.24■□□□□ 0.83
HDDC3-205ENST00000559898 LPXNO60711 386 aa20.24■□□□□ 0.83
HDDC3-205ENST00000559898 REC8O95072 547 aa20.24■□□□□ 0.83
HDDC3-205ENST00000559898 PARNO95453 639 aaKnown RBP20.24■□□□□ 0.83
HDDC3-205ENST00000559898 MGAT3Q09327 533 aa20.24■□□□□ 0.83
HDDC3-205ENST00000559898 ZBED2Q9BTP6 218 aa20.24■□□□□ 0.83
HDDC3-205ENST00000559898 ZMYND12Q9H0C1 365 aa20.24■□□□□ 0.83
HDDC3-205ENST00000559898 EHMT1Q9H9B1 1298 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms