RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 SMARCC2Q8TAQ2 1214 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 BCAS4Q8TDM0 211 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 RUBCNQ92622 972 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 ZNF653Q96CK0 615 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 DHRS1Q96LJ7 313 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 CAPS2Q9BXY5 557 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 ZC3H12CQ9C0D7 883 aaKnown RBP5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 NACA2Q9H009 215 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 MIS12Q9H081 205 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 BRD8Q9H0E9 1235 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 IRF2BPLQ9H1B7 796 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 FAM204AQ9H8W3 233 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 LGR6Q9HBX8 967 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 MIS18AQ9NYP9 233 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 ATXN10Q9UBB4 475 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 DKK3Q9UBP4 350 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 DDX20Q9UHI6 824 aaKnown RBP5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 ZDHHC9Q9Y397 364 aa5.34□□□□□ -1.55
HMGB1P19-201ENST00000517578 KIF14Q15058 1648 aa5.34□□□□□ -1.56
HMGB1P19-201ENST00000517578 KDM5CP41229 1560 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 ABCC2Q92887 1545 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 GRIN2AQ12879 1464 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 CCDC141Q6ZP82 1450 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 ANKRD50Q9ULJ7 1429 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 NPHP3Q7Z494 1330 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 EME2A4GXA9 379 aaPredicted RBP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 LRRIQ3A6PVS8 624 aaPredicted RBP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 EIF3HO15372 352 aaKnown RBP eCLIP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 BIRC5O15392 142 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 CYTH3O43739 400 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 MTRF1O75570 445 aaKnown RBP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 ZNF189O75820 626 aaPredicted RBP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 FLOT1O75955 427 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 NPTXRO95502 500 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 PARP1P09874 1014 aaKnown RBP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 ALDH3A1P30838 453 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 ZNF165P49910 485 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 RARSP54136 660 aaKnown RBP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 APBA1Q02410 837 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 PPP2R3AQ06190 1150 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 LRMPQ12912 555 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 FOXD4Q12950 439 aaPredicted RBP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 ZBTB17Q13105 803 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 AP3B2Q13367 1082 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 SNX1Q13596 522 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 BLMHQ13867 455 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 ZNF394Q53GI3 561 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 ZNF365Q70YC5 407 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 MIGA1Q8NAN2 632 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 ZBTB8BQ8NAP8 495 aaPredicted RBP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 SMC1BQ8NDV3 1235 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 CFAP61Q8NHU2 1237 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 PANK1Q8TE04 598 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 FBF1Q8TES7 1133 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 TEKT4Q8WW24 435 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 OPTNQ96CV9 577 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 RPGRIP1Q96KN7 1286 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 PPP1R13BQ96KQ4 1090 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 TRAPPC9Q96Q05 1148 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 SMC6Q96SB8 1091 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 CARD6Q9BX69 1037 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 FAM192AQ9GZU8 254 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 TNMDQ9H2S6 317 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 CENPHQ9H3R5 247 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 BICC1Q9H694 974 aaKnown RBP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 CCDC86Q9H6F5 360 aaKnown RBP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 EBF2Q9HAK2 575 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 CD248Q9HCU0 757 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 DMAP1Q9NPF5 467 aaPredicted RBP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 CRIM1Q9NZV1 1036 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 HDAC6Q9UBN7 1215 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 CTNNAL1Q9UBT7 734 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 CROTQ9UKG9 612 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 SLC5A6Q9Y289 635 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 SLC4A7Q9Y6M7 1214 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 U3KQE9 123 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 GCC2Q8IWJ2 1684 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 EFCAB5A4FU69 1503 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 PRDM15P57071 1507 aaPredicted RBP5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 AK9Q5TCS8 1911 aa5.33□□□□□ -1.56
HMGB1P19-201ENST00000517578 AQRO60306 1485 aaKnown RBP eCLIP5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 TEX14Q8IWB6 1497 aa5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 POLR3AO14802 1390 aaPredicted RBP5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 CFAP73A6NFT4 308 aa5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 H3BQF6 201 aa5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 NDUFAB1O14561 156 aa5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 ZNF862O60290 1169 aa5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 ATP6V1G1O75348 118 aa5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 SEC31AO94979 1220 aaKnown RBP5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 EIF2S1P05198 315 aaKnown RBP5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 ZSCAN22P10073 491 aaPredicted RBP5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 SYT1P21579 422 aa5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 SMARCA1P28370 1054 aa5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 ARPC4P59998 168 aa5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 TUBA4AP68366 448 aa5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 ADCY1Q08828 1119 aa5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 CDK5R2Q13319 367 aa5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 CASP8Q14790 479 aa5.32□□□□□ -1.56
HMGB1P19-201ENST00000517578 SEPT7Q16181 437 aaKnown RBP5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms