RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 ASH2LQ9UBL3 628 aa8.1□□□□□ -1.11
VPS50-212ENST00000476413 GPR160Q9UJ42 338 aa8.1□□□□□ -1.11
VPS50-212ENST00000476413 ZNF652Q9Y2D9 606 aa8.1□□□□□ -1.11
VPS50-212ENST00000476413 FZD9O00144 591 aa8.09□□□□□ -1.11
VPS50-212ENST00000476413 HGSO14964 777 aaPredicted RBP8.09□□□□□ -1.11
VPS50-212ENST00000476413 PTX3P26022 381 aaPredicted RBP8.09□□□□□ -1.11
VPS50-212ENST00000476413 SESN3P58005 492 aa8.09□□□□□ -1.11
VPS50-212ENST00000476413 SNX17Q15036 470 aa8.09□□□□□ -1.11
VPS50-212ENST00000476413 ESRP1Q6NXG1 681 aaKnown RBP8.09□□□□□ -1.11
VPS50-212ENST00000476413 HDGFL2Q7Z4V5 671 aaPredicted RBP8.09□□□□□ -1.11
VPS50-212ENST00000476413 DCP2Q8IU60 420 aaKnown RBP8.09□□□□□ -1.11
VPS50-212ENST00000476413 FMNL3Q8IVF7 1028 aa8.09□□□□□ -1.11
VPS50-212ENST00000476413 NLGN4XQ8N0W4 816 aa8.09□□□□□ -1.11
VPS50-212ENST00000476413 AGBL5Q8NDL9 886 aa8.09□□□□□ -1.11
VPS50-212ENST00000476413 CLEC4DQ8WXI8 215 aa8.09□□□□□ -1.11
VPS50-212ENST00000476413 ZMAT4Q9H898 229 aa8.09□□□□□ -1.11
VPS50-212ENST00000476413 ATP23Q9Y6H3 246 aa8.09□□□□□ -1.11
VPS50-212ENST00000476413 TCRBV5S2A0A599 114 aa8.08□□□□□ -1.12
VPS50-212ENST00000476413 WNT11O96014 354 aa8.08□□□□□ -1.12
VPS50-212ENST00000476413 KIF11P52732 1056 aa8.08□□□□□ -1.12
VPS50-212ENST00000476413 TUSC3Q13454 348 aa8.08□□□□□ -1.12
VPS50-212ENST00000476413 CHRNA2Q15822 529 aa8.08□□□□□ -1.12
VPS50-212ENST00000476413 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.08□□□□□ -1.12
VPS50-212ENST00000476413 CABP7Q86V35 215 aa8.08□□□□□ -1.12
VPS50-212ENST00000476413 TP53INP2Q8IXH6 220 aa8.08□□□□□ -1.12
VPS50-212ENST00000476413 SIRT2Q8IXJ6 389 aa8.08□□□□□ -1.12
VPS50-212ENST00000476413 MYLIPQ8WY64 445 aa8.08□□□□□ -1.12
VPS50-212ENST00000476413 SCYL1Q96KG9 808 aa8.08□□□□□ -1.12
VPS50-212ENST00000476413 KCNH7Q9NS40 1196 aa8.08□□□□□ -1.12
VPS50-212ENST00000476413 MYOTQ9UBF9 498 aa8.08□□□□□ -1.12
VPS50-212ENST00000476413 PALD1Q9ULE6 856 aa8.08□□□□□ -1.12
VPS50-212ENST00000476413 RASSF10A6NK89 507 aa8.07□□□□□ -1.12
VPS50-212ENST00000476413 FBXO21O94952 628 aa8.07□□□□□ -1.12
VPS50-212ENST00000476413 C4BPAP04003 597 aaKnown RBP8.07□□□□□ -1.12
VPS50-212ENST00000476413 PTPN1P18031 435 aaKnown RBP8.07□□□□□ -1.12
VPS50-212ENST00000476413 IARSP41252 1262 aaKnown RBP8.07□□□□□ -1.12
VPS50-212ENST00000476413 ERVFRD-1P60508 538 aa8.07□□□□□ -1.12
VPS50-212ENST00000476413 ZNF174Q15697 407 aa8.07□□□□□ -1.12
VPS50-212ENST00000476413 ABCB5Q2M3G0 1257 aa8.07□□□□□ -1.12
VPS50-212ENST00000476413 CATSPEREQ5SY80 951 aa8.07□□□□□ -1.12
VPS50-212ENST00000476413 GPR158Q5T848 1215 aa8.07□□□□□ -1.12
VPS50-212ENST00000476413 CC2D1AQ6P1N0 951 aaPredicted RBP8.07□□□□□ -1.12
VPS50-212ENST00000476413 PHOSPHO1Q8TCT1 267 aa8.07□□□□□ -1.12
VPS50-212ENST00000476413 RNF32Q9H0A6 362 aa8.07□□□□□ -1.12
VPS50-212ENST00000476413 A0A1W2PQJ5 194 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 SHTN1A0MZ66 631 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 ZC3H12DA2A288 527 aaKnown RBP8.06□□□□□ -1.12
VPS50-212ENST00000476413 LCHNA4D1U4 455 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 ACOT7O00154 380 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 AKAP10O43572 662 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 BUB1BO60566 1050 aaPredicted RBP8.06□□□□□ -1.12
VPS50-212ENST00000476413 MAFKO60675 156 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 ADAM23O75077 832 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 HIP1RO75146 1068 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 CYBBP04839 570 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 RAC2P15153 192 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 SDHAP31040 664 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 RAB27AP51159 221 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 LRRC41Q15345 812 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 RASSF3Q86WH2 238 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 CMIPQ8IY22 773 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 ZNF610Q8N9Z0 462 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 ARRDC4Q8NCT1 418 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 FLAD1Q8NFF5 587 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 TSR2Q969E8 191 aaKnown RBP8.06□□□□□ -1.12
VPS50-212ENST00000476413 CHMP4CQ96CF2 233 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 AHCYL2Q96HN2 611 aaKnown RBP8.06□□□□□ -1.12
VPS50-212ENST00000476413 C16orf92Q96LL3 132 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 PCIF1Q9H4Z3 704 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 TOPORSQ9NS56 1045 aaPredicted RBP8.06□□□□□ -1.12
VPS50-212ENST00000476413 TOMM22Q9NS69 142 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 PCMTD2Q9NV79 361 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 YBX2Q9Y2T7 364 aaKnown RBP8.06□□□□□ -1.12
VPS50-212ENST00000476413 PCDHB4Q9Y5E5 795 aa8.06□□□□□ -1.12
VPS50-212ENST00000476413 SDHBP21912 280 aa8.05□□□□□ -1.12
VPS50-212ENST00000476413 GJA4P35212 333 aa8.05□□□□□ -1.12
VPS50-212ENST00000476413 FAPQ12884 760 aa8.05□□□□□ -1.12
VPS50-212ENST00000476413 KLF1Q13351 362 aaPredicted RBP8.05□□□□□ -1.12
VPS50-212ENST00000476413 LRRC32Q14392 662 aa8.05□□□□□ -1.12
VPS50-212ENST00000476413 PAQR3Q6TCH7 311 aa8.05□□□□□ -1.12
VPS50-212ENST00000476413 PASD1Q8IV76 773 aa8.05□□□□□ -1.12
VPS50-212ENST00000476413 HOOK2Q96ED9 719 aa8.05□□□□□ -1.12
VPS50-212ENST00000476413 RTFDC1Q9BY42 306 aaPredicted RBP8.05□□□□□ -1.12
VPS50-212ENST00000476413 AP5M1Q9H0R1 490 aa8.05□□□□□ -1.12
VPS50-212ENST00000476413 RC3H2Q9HBD1 1191 aaKnown RBP8.05□□□□□ -1.12
VPS50-212ENST00000476413 ACSS2Q9NR19 701 aa8.05□□□□□ -1.12
VPS50-212ENST00000476413 C14orf119Q9NWQ9 140 aa8.05□□□□□ -1.12
VPS50-212ENST00000476413 FAN1Q9Y2M0 1017 aa8.05□□□□□ -1.12
VPS50-212ENST00000476413 SPEF1Q9Y4P9 236 aa8.05□□□□□ -1.12
VPS50-212ENST00000476413 HCFC2Q9Y5Z7 792 aa8.05□□□□□ -1.12
VPS50-212ENST00000476413 TSPAN6O43657 245 aa8.04□□□□□ -1.12
VPS50-212ENST00000476413 LSP1P33241 339 aa8.04□□□□□ -1.12
VPS50-212ENST00000476413 ARL4AP40617 200 aa8.04□□□□□ -1.12
VPS50-212ENST00000476413 TMEM132BQ14DG7 1078 aa8.04□□□□□ -1.12
VPS50-212ENST00000476413 PDCD1Q15116 288 aa8.04□□□□□ -1.12
VPS50-212ENST00000476413 FYB2Q5VWT5 728 aa8.04□□□□□ -1.12
VPS50-212ENST00000476413 BTBD8Q5XKL5 378 aa8.04□□□□□ -1.12
VPS50-212ENST00000476413 MILR1Q7Z6M3 343 aa8.04□□□□□ -1.12
VPS50-212ENST00000476413 ABI1Q8IZP0 508 aa8.04□□□□□ -1.12
VPS50-212ENST00000476413 TTLL11Q8NHH1 800 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms