RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 NOD1Q9Y239 953 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 FAM86B1E9PN63 330 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 FAM86B2P0C5J1 330 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 ARP10275 920 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 EXOC8Q8IYI6 725 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 ATP6V0A1Q93050 837 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 RAB34Q9BZG1 259 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 BTBD18B2RXH4 712 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 PPFIA3O75145 1194 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 ACTR2P61160 394 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 TLE2Q04725 743 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 TRIM60Q495X7 471 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 CEP131Q9UPN4 1083 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 PCDHA10Q9Y5I2 948 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 A0A1W2PPC1 479 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 H3BRB1 525 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 TUT1Q9H6E5 874 aaKnown RBP12.08□□□□□ -0.48
UBR4-208ENST00000459947 SLC26A4O43511 780 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 NEMFO60524 1076 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 CCNT1O60563 726 aaKnown RBP12.08□□□□□ -0.48
UBR4-208ENST00000459947 TCF7P36402 384 aaPredicted RBP12.08□□□□□ -0.48
UBR4-208ENST00000459947 ATN1P54259 1190 aaPredicted RBP12.08□□□□□ -0.48
UBR4-208ENST00000459947 SP2Q02086 613 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 TMEM266Q2M3C6 531 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 FAM126BQ8IXS8 530 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 RETREG2Q8NC44 543 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 GLG1Q92896 1179 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 TMEM39AQ9NV64 488 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 DDX49Q9Y6V7 483 aaKnown RBP12.08□□□□□ -0.48
UBR4-208ENST00000459947 MSH4O15457 936 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 NBPF20Q3BBV1 942 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 FAM47CQ5HY64 1035 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 MIER3Q7Z3K6 550 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 RSPH3Q86UC2 560 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 KCNMB3Q9NPA1 279 aa12.08□□□□□ -0.48
UBR4-208ENST00000459947 NRCAMQ92823 1304 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 C17orf102A2RUQ5 167 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 HBP1O60381 514 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 PFKMP08237 780 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 RBL2Q08999 1139 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 PTK7Q13308 1070 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 HSDL1Q3SXM5 330 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 ZNF484Q5JVG2 852 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 ERMNQ8TAM6 284 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 OXER1Q8TDS5 423 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 LENG9Q96B70 501 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 ZNF302Q9NR11 478 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 NRBP2Q9NSY0 501 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 GTF2IRD1Q9UHL9 959 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 GSTTP1A0A1W2PQM5 241 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 BACH1O14867 736 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 STAT5BP51692 787 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 PPP2R5CQ13362 524 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 CALCRLQ16602 461 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 KIAA0753Q2KHM9 967 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 TTC38Q5R3I4 469 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 UTP14CQ5TAP6 766 aaKnown RBP12.07□□□□□ -0.48
UBR4-208ENST00000459947 JPH2Q9BR39 696 aaPredicted RBP12.07□□□□□ -0.48
UBR4-208ENST00000459947 C16orf70Q9BSU1 422 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 ZSCAN16Q9H4T2 348 aaPredicted RBP12.07□□□□□ -0.48
UBR4-208ENST00000459947 IGKV6D-21A0A0A0MT36 114 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 ATP9AO75110 1047 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 CD2BP2O95400 341 aaKnown RBP12.07□□□□□ -0.48
UBR4-208ENST00000459947 CD4P01730 458 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 MUTP22033 750 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 ITGB3BPQ13352 177 aaPredicted RBP12.07□□□□□ -0.48
UBR4-208ENST00000459947 PPIGQ13427 754 aaKnown RBP eCLIP12.07□□□□□ -0.48
UBR4-208ENST00000459947 TAF2Q6P1X5 1199 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 MTIF3Q9H2K0 278 aaKnown RBP12.07□□□□□ -0.48
UBR4-208ENST00000459947 PDLIM7Q9NR12 457 aa12.07□□□□□ -0.48
UBR4-208ENST00000459947 PITPNM1O00562 1244 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 PQBP1O60828 265 aaKnown RBP12.06□□□□□ -0.48
UBR4-208ENST00000459947 PSMD10O75832 226 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 NR5A1Q13285 461 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 MCTP1Q6DN14 999 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 ABHD15Q6UXT9 468 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 TMEM199Q8N511 208 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 KCTD17Q8N5Z5 321 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 ETNPPLQ8TBG4 499 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 KAT2BQ92831 832 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 PKD2L1Q9P0L9 805 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 CEP350Q5VT06 3117 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 TDP2O95551 362 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 EPHA7Q15375 998 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 BBXQ8WY36 941 aaPredicted RBP12.06□□□□□ -0.48
UBR4-208ENST00000459947 DISC1Q9NRI5 854 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 DAXXQ9UER7 740 aaPredicted RBP12.06□□□□□ -0.48
UBR4-208ENST00000459947 TBX21Q9UL17 535 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 ALPK3Q96L96 1907 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 DHX15O43143 795 aaKnown RBP12.06□□□□□ -0.48
UBR4-208ENST00000459947 RAG1P15918 1043 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 BMP8BP34820 402 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 FOSBP53539 338 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 ATP8B4Q8TF62 1192 aa12.06□□□□□ -0.48
UBR4-208ENST00000459947 PRPHP41219 470 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 GUCY1B3Q02153 619 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 SAMM50Q9Y512 469 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 MAGEB2O15479 319 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 OR52Z1P0C646 297 aa12.05□□□□□ -0.48
UBR4-208ENST00000459947 PPFIA1Q13136 1202 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms