RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 TRIM50Q86XT4 487 aa22.17■■□□□ 1.14
USP40-207ENST00000450940 CYP2W1Q8TAV3 490 aa22.17■■□□□ 1.14
USP40-207ENST00000450940 CRYGNQ8WXF5 182 aa22.17■■□□□ 1.14
USP40-207ENST00000450940 NKX2-4Q9H2Z4 354 aa22.17■■□□□ 1.14
USP40-207ENST00000450940 NFASCO94856 1347 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 MEIS1O00470 390 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 TREHO43280 583 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 GNAT1P11488 350 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 FOSL2P15408 326 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 RABGGTBP53611 331 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 SP4Q02446 784 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 MBTPS1Q14703 1052 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 UTP14CQ5TAP6 766 aaKnown RBP22.16■■□□□ 1.14
USP40-207ENST00000450940 MCTP2Q6DN12 878 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 CNKSR3Q6P9H4 555 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 NIPA1Q7RTP0 329 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 PGBD1Q96JS3 809 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 RNF26Q9BY78 433 aaPredicted RBP22.16■■□□□ 1.14
USP40-207ENST00000450940 SLC28A3Q9HAS3 691 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 TMEM260Q9NX78 707 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 CYP46A1Q9Y6A2 500 aa22.16■■□□□ 1.14
USP40-207ENST00000450940 EYSQ5T1H1 3165 aa22.15■■□□□ 1.14
USP40-207ENST00000450940 CAND2O75155 1236 aa22.15■■□□□ 1.14
USP40-207ENST00000450940 MAFAQ8NHW3 353 aaPredicted RBP22.15■■□□□ 1.14
USP40-207ENST00000450940 CCDC12Q8WUD4 166 aaPredicted RBP22.15■■□□□ 1.14
USP40-207ENST00000450940 SETD4Q9NVD3 440 aa22.15■■□□□ 1.14
USP40-207ENST00000450940 EMSYQ7Z589 1322 aa22.14■■□□□ 1.14
USP40-207ENST00000450940 NRCAMQ92823 1304 aa22.14■■□□□ 1.14
USP40-207ENST00000450940 LGR5O75473 907 aa22.14■■□□□ 1.13
USP40-207ENST00000450940 CYP3A4P08684 503 aa22.14■■□□□ 1.13
USP40-207ENST00000450940 ARP10275 920 aa22.14■■□□□ 1.13
USP40-207ENST00000450940 MYOGP15173 224 aa22.14■■□□□ 1.13
USP40-207ENST00000450940 THPOP40225 353 aa22.14■■□□□ 1.13
USP40-207ENST00000450940 ARHGAP4P98171 946 aa22.14■■□□□ 1.13
USP40-207ENST00000450940 HERC6Q8IVU3 1022 aa22.14■■□□□ 1.13
USP40-207ENST00000450940 PHKBQ93100 1093 aa22.14■■□□□ 1.13
USP40-207ENST00000450940 ZNF274Q96GC6 653 aaPredicted RBP22.14■■□□□ 1.13
USP40-207ENST00000450940 JPH1Q9HDC5 661 aaPredicted RBP22.14■■□□□ 1.13
USP40-207ENST00000450940 ERAP1Q9NZ08 941 aa22.14■■□□□ 1.13
USP40-207ENST00000450940 TRANK1O15050 2925 aa22.13■■□□□ 1.13
USP40-207ENST00000450940 ABHD14A-ACY1A0A1B0GW23 586 aa22.13■■□□□ 1.13
USP40-207ENST00000450940 RSPH10B2B2RC85 870 aa22.13■■□□□ 1.13
USP40-207ENST00000450940 ADAMTS3O15072 1205 aa22.13■■□□□ 1.13
USP40-207ENST00000450940 RSPH10BP0C881 870 aa22.13■■□□□ 1.13
USP40-207ENST00000450940 WDR5P61964 334 aaKnown RBP22.13■■□□□ 1.13
USP40-207ENST00000450940 TCTN1Q2MV58 587 aa22.13■■□□□ 1.13
USP40-207ENST00000450940 LMBR1Q8WVP7 490 aa22.13■■□□□ 1.13
USP40-207ENST00000450940 SMARCAD1Q9H4L7 1026 aa22.13■■□□□ 1.13
USP40-207ENST00000450940 AGO4Q9HCK5 861 aaKnown RBP22.13■■□□□ 1.13
USP40-207ENST00000450940 C6orf50Q9HD87 102 aa22.13■■□□□ 1.13
USP40-207ENST00000450940 PKD2L1Q9P0L9 805 aa22.13■■□□□ 1.13
USP40-207ENST00000450940 SLC9A2Q9UBY0 812 aa22.13■■□□□ 1.13
USP40-207ENST00000450940 PRUNE2Q8WUY3 3088 aa22.12■■□□□ 1.13
USP40-207ENST00000450940 EFCAB14O75071 495 aa22.12■■□□□ 1.13
USP40-207ENST00000450940 GNA11P29992 359 aa22.12■■□□□ 1.13
USP40-207ENST00000450940 AKAP17AQ02040 695 aaKnown RBP22.12■■□□□ 1.13
USP40-207ENST00000450940 ITGB3BPQ13352 177 aaPredicted RBP22.12■■□□□ 1.13
USP40-207ENST00000450940 JAKMIP3Q5VZ66 844 aa22.12■■□□□ 1.13
USP40-207ENST00000450940 RPAINQ86UA6 219 aa22.12■■□□□ 1.13
USP40-207ENST00000450940 PCYT2Q99447 389 aa22.12■■□□□ 1.13
USP40-207ENST00000450940 PRDM12Q9H4Q4 367 aa22.12■■□□□ 1.13
USP40-207ENST00000450940 NCOA5Q9HCD5 579 aaKnown RBP22.12■■□□□ 1.13
USP40-207ENST00000450940 UNC80Q8N2C7 3258 aa22.11■■□□□ 1.13
USP40-207ENST00000450940 MICAL3Q7RTP6 2002 aa22.11■■□□□ 1.13
USP40-207ENST00000450940 IGLV3-22A0A075B6J6 115 aa22.11■■□□□ 1.13
USP40-207ENST00000450940 ATG7O95352 703 aa22.11■■□□□ 1.13
USP40-207ENST00000450940 KCNJ6P48051 423 aa22.11■■□□□ 1.13
USP40-207ENST00000450940 CCT2P78371 535 aaKnown RBP22.11■■□□□ 1.13
USP40-207ENST00000450940 MKRN4PQ13434 485 aaPredicted RBP22.11■■□□□ 1.13
USP40-207ENST00000450940 IKBKEQ14164 716 aa22.11■■□□□ 1.13
USP40-207ENST00000450940 FAM26DQ5JW98 314 aa22.11■■□□□ 1.13
USP40-207ENST00000450940 REXO1Q8N1G1 1221 aaKnown RBP22.11■■□□□ 1.13
USP40-207ENST00000450940 SDF4Q9BRK5 362 aa22.11■■□□□ 1.13
USP40-207ENST00000450940 SLC26A6Q9BXS9 759 aa22.11■■□□□ 1.13
USP40-207ENST00000450940 SH3GLB2Q9NR46 395 aa22.11■■□□□ 1.13
USP40-207ENST00000450940 MBLAC1A4D2B0 266 aaPredicted RBP22.1■■□□□ 1.13
USP40-207ENST00000450940 FAM86B1E9PN63 330 aa22.1■■□□□ 1.13
USP40-207ENST00000450940 FAM86B2P0C5J1 330 aa22.1■■□□□ 1.13
USP40-207ENST00000450940 ACTR2P61160 394 aa22.1■■□□□ 1.13
USP40-207ENST00000450940 PLEKHG4Q58EX7 1191 aa22.1■■□□□ 1.13
USP40-207ENST00000450940 PPP2R2DQ66LE6 453 aa22.1■■□□□ 1.13
USP40-207ENST00000450940 GLG1Q92896 1179 aa22.1■■□□□ 1.13
USP40-207ENST00000450940 GAS2L1Q99501 681 aaPredicted RBP22.1■■□□□ 1.13
USP40-207ENST00000450940 UPF3BQ9BZI7 483 aaKnown RBP22.1■■□□□ 1.13
USP40-207ENST00000450940 KIF28PB7ZC32 967 aa22.09■■□□□ 1.13
USP40-207ENST00000450940 DHX15O43143 795 aaKnown RBP22.09■■□□□ 1.13
USP40-207ENST00000450940 CA3P07451 260 aa22.09■■□□□ 1.13
USP40-207ENST00000450940 ZNF76P36508 570 aa22.09■■□□□ 1.13
USP40-207ENST00000450940 ADGRE1Q14246 886 aa22.09■■□□□ 1.13
USP40-207ENST00000450940 PLPPR4Q7Z2D5 763 aa22.09■■□□□ 1.13
USP40-207ENST00000450940 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.09■■□□□ 1.13
USP40-207ENST00000450940 CCDC148Q8NFR7 591 aa22.09■■□□□ 1.13
USP40-207ENST00000450940 DBF4BQ8NFT6 615 aa22.09■■□□□ 1.13
USP40-207ENST00000450940 BICD2Q8TD16 824 aa22.09■■□□□ 1.13
USP40-207ENST00000450940 IGKV6D-21A0A0A0MT36 114 aa22.08■■□□□ 1.13
USP40-207ENST00000450940 DEFB103AP81534 67 aa22.08■■□□□ 1.13
USP40-207ENST00000450940 PPFIA1Q13136 1202 aa22.08■■□□□ 1.13
USP40-207ENST00000450940 GRIK4Q16099 956 aa22.08■■□□□ 1.13
USP40-207ENST00000450940 MARCH8Q5T0T0 291 aa22.08■■□□□ 1.13
USP40-207ENST00000450940 TAF2Q6P1X5 1199 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms