RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ZNF713Q8N859 430 aaPredicted RBP22.34■■□□□ 1.17
LIME1-201ENST00000309546 KCNB2Q92953 911 aa22.34■■□□□ 1.17
LIME1-201ENST00000309546 ZBED2Q9BTP6 218 aa22.34■■□□□ 1.17
LIME1-201ENST00000309546 JADE2Q9NQC1 790 aa22.34■■□□□ 1.17
LIME1-201ENST00000309546 MICAL3Q7RTP6 2002 aa22.34■■□□□ 1.17
LIME1-201ENST00000309546 EMSYQ7Z589 1322 aa22.33■■□□□ 1.17
LIME1-201ENST00000309546 ABHD14A-ACY1A0A1B0GW23 586 aa22.33■■□□□ 1.17
LIME1-201ENST00000309546 SMCO2A6NFE2 343 aa22.33■■□□□ 1.17
LIME1-201ENST00000309546 LGR5O75473 907 aa22.33■■□□□ 1.17
LIME1-201ENST00000309546 MARK3P27448 753 aa22.33■■□□□ 1.17
LIME1-201ENST00000309546 IKBKEQ14164 716 aa22.33■■□□□ 1.17
LIME1-201ENST00000309546 MICALL1Q8N3F8 863 aa22.33■■□□□ 1.17
LIME1-201ENST00000309546 LMBR1Q8WVP7 490 aa22.33■■□□□ 1.17
LIME1-201ENST00000309546 ANO3Q9BYT9 981 aa22.33■■□□□ 1.17
LIME1-201ENST00000309546 PRDM6Q9NQX0 595 aa22.33■■□□□ 1.17
LIME1-201ENST00000309546 TMEM260Q9NX78 707 aa22.33■■□□□ 1.17
LIME1-201ENST00000309546 BARHL2Q9NY43 387 aa22.33■■□□□ 1.17
LIME1-201ENST00000309546 ARHGEF15O94989 841 aa22.32■■□□□ 1.16
LIME1-201ENST00000309546 ADD1P35611 737 aaKnown RBP22.32■■□□□ 1.16
LIME1-201ENST00000309546 SEPT1Q8WYJ6 367 aa22.32■■□□□ 1.16
LIME1-201ENST00000309546 GLG1Q92896 1179 aa22.32■■□□□ 1.16
LIME1-201ENST00000309546 MXRA8Q9BRK3 442 aa22.32■■□□□ 1.16
LIME1-201ENST00000309546 A0A0C4DFX4 3053 aa22.32■■□□□ 1.16
LIME1-201ENST00000309546 CCDC196A0A1B0GTZ2 297 aa22.31■■□□□ 1.16
LIME1-201ENST00000309546 GSTTP1A0A1W2PQM5 241 aa22.31■■□□□ 1.16
LIME1-201ENST00000309546 RFXAPO00287 272 aa22.31■■□□□ 1.16
LIME1-201ENST00000309546 EFCAB14O75071 495 aa22.31■■□□□ 1.16
LIME1-201ENST00000309546 FOSP01100 380 aaPredicted RBP22.31■■□□□ 1.16
LIME1-201ENST00000309546 RPS6KB1P23443 525 aa22.31■■□□□ 1.16
LIME1-201ENST00000309546 FAM117BQ6P1L5 589 aa22.31■■□□□ 1.16
LIME1-201ENST00000309546 ARNTL2Q8WYA1 636 aa22.31■■□□□ 1.16
LIME1-201ENST00000309546 JPH1Q9HDC5 661 aaPredicted RBP22.31■■□□□ 1.16
LIME1-201ENST00000309546 KCNH7Q9NS40 1196 aa22.31■■□□□ 1.16
LIME1-201ENST00000309546 COL4A4P53420 1690 aaPredicted RBP22.3■■□□□ 1.16
LIME1-201ENST00000309546 CHD7Q9P2D1 2997 aa22.3■■□□□ 1.16
LIME1-201ENST00000309546 LCHNA4D1U4 455 aa22.3■■□□□ 1.16
LIME1-201ENST00000309546 MAFGO15525 162 aa22.3■■□□□ 1.16
LIME1-201ENST00000309546 TAP1Q03518 808 aa22.3■■□□□ 1.16
LIME1-201ENST00000309546 PPFIA1Q13136 1202 aa22.3■■□□□ 1.16
LIME1-201ENST00000309546 AP3B2Q13367 1082 aa22.3■■□□□ 1.16
LIME1-201ENST00000309546 PFKFB3Q16875 520 aaPredicted RBP22.3■■□□□ 1.16
LIME1-201ENST00000309546 DBF4BQ8NFT6 615 aa22.3■■□□□ 1.16
LIME1-201ENST00000309546 CYP2W1Q8TAV3 490 aa22.3■■□□□ 1.16
LIME1-201ENST00000309546 GLT8D2Q9H1C3 349 aa22.3■■□□□ 1.16
LIME1-201ENST00000309546 ERAP1Q9NZ08 941 aa22.3■■□□□ 1.16
LIME1-201ENST00000309546 NRCAMQ92823 1304 aa22.3■■□□□ 1.16
LIME1-201ENST00000309546 EPOPA6NHQ4 379 aa22.29■■□□□ 1.16
LIME1-201ENST00000309546 CAND2O75155 1236 aa22.29■■□□□ 1.16
LIME1-201ENST00000309546 SCG2P13521 617 aa22.29■■□□□ 1.16
LIME1-201ENST00000309546 PSMA5P28066 241 aa22.29■■□□□ 1.16
LIME1-201ENST00000309546 JAKMIP3Q5VZ66 844 aa22.29■■□□□ 1.16
LIME1-201ENST00000309546 SPRED2Q7Z698 418 aa22.29■■□□□ 1.16
LIME1-201ENST00000309546 TEX2Q8IWB9 1127 aa22.29■■□□□ 1.16
LIME1-201ENST00000309546 SDF4Q9BRK5 362 aa22.29■■□□□ 1.16
LIME1-201ENST00000309546 SLC9A2Q9UBY0 812 aa22.29■■□□□ 1.16
LIME1-201ENST00000309546 GJB5O95377 273 aa22.28■■□□□ 1.16
LIME1-201ENST00000309546 ARP10275 920 aa22.28■■□□□ 1.16
LIME1-201ENST00000309546 ZNF76P36508 570 aa22.28■■□□□ 1.16
LIME1-201ENST00000309546 SREBF1P36956 1147 aa22.28■■□□□ 1.16
LIME1-201ENST00000309546 CLK2P49760 499 aaKnown RBP22.28■■□□□ 1.16
LIME1-201ENST00000309546 ADAM17P78536 824 aa22.28■■□□□ 1.16
LIME1-201ENST00000309546 CEP55Q53EZ4 464 aa22.28■■□□□ 1.16
LIME1-201ENST00000309546 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.28■■□□□ 1.16
LIME1-201ENST00000309546 MYOCDQ8IZQ8 938 aa22.28■■□□□ 1.16
LIME1-201ENST00000309546 SMARCAD1Q9H4L7 1026 aa22.28■■□□□ 1.16
LIME1-201ENST00000309546 SIP14410 1827 aa22.28■■□□□ 1.16
LIME1-201ENST00000309546 NID2Q14112 1375 aa22.27■■□□□ 1.16
LIME1-201ENST00000309546 GTPBP6O43824 516 aaPredicted RBP22.27■■□□□ 1.16
LIME1-201ENST00000309546 PPFIA3O75145 1194 aa22.27■■□□□ 1.16
LIME1-201ENST00000309546 AMHP03971 560 aa22.27■■□□□ 1.16
LIME1-201ENST00000309546 IGBP1P78318 339 aa22.27■■□□□ 1.16
LIME1-201ENST00000309546 AKAP17AQ02040 695 aaKnown RBP22.27■■□□□ 1.16
LIME1-201ENST00000309546 GRIK4Q16099 956 aa22.27■■□□□ 1.16
LIME1-201ENST00000309546 PLEKHG4Q58EX7 1191 aa22.27■■□□□ 1.16
LIME1-201ENST00000309546 RUFY4Q6ZNE9 571 aa22.27■■□□□ 1.16
LIME1-201ENST00000309546 SEPT8Q92599 483 aa22.27■■□□□ 1.16
LIME1-201ENST00000309546 PHKBQ93100 1093 aa22.27■■□□□ 1.16
LIME1-201ENST00000309546 OSBPL7Q9BZF2 842 aa22.27■■□□□ 1.16
LIME1-201ENST00000309546 AZI2Q9H6S1 392 aa22.27■■□□□ 1.16
LIME1-201ENST00000309546 AGO4Q9HCK5 861 aaKnown RBP22.27■■□□□ 1.16
LIME1-201ENST00000309546 THEGQ9P2T0 379 aa22.27■■□□□ 1.16
LIME1-201ENST00000309546 DDX39AO00148 427 aaKnown RBP22.26■■□□□ 1.15
LIME1-201ENST00000309546 CCDC12Q8WUD4 166 aaPredicted RBP22.26■■□□□ 1.15
LIME1-201ENST00000309546 RAD9AQ99638 391 aa22.26■■□□□ 1.15
LIME1-201ENST00000309546 TUBE1Q9UJT0 475 aa22.26■■□□□ 1.15
LIME1-201ENST00000309546 MTUS1Q9ULD2 1270 aa22.26■■□□□ 1.15
LIME1-201ENST00000309546 NFASCO94856 1347 aa22.26■■□□□ 1.15
LIME1-201ENST00000309546 PRPF3O43395 683 aaKnown RBP22.25■■□□□ 1.15
LIME1-201ENST00000309546 ACTR2P61160 394 aa22.25■■□□□ 1.15
LIME1-201ENST00000309546 CCT2P78371 535 aaKnown RBP22.25■■□□□ 1.15
LIME1-201ENST00000309546 ITGB3BPQ13352 177 aaPredicted RBP22.25■■□□□ 1.15
LIME1-201ENST00000309546 TAF2Q6P1X5 1199 aa22.25■■□□□ 1.15
LIME1-201ENST00000309546 PCYT2Q99447 389 aa22.25■■□□□ 1.15
LIME1-201ENST00000309546 SLC26A6Q9BXS9 759 aa22.25■■□□□ 1.15
LIME1-201ENST00000309546 AGXT2Q9BYV1 514 aa22.25■■□□□ 1.15
LIME1-201ENST00000309546 C6orf50Q9HD87 102 aa22.25■■□□□ 1.15
LIME1-201ENST00000309546 TRPC6Q9Y210 931 aa22.25■■□□□ 1.15
LIME1-201ENST00000309546 SKIV2LQ15477 1246 aaKnown RBP22.24■■□□□ 1.15
LIME1-201ENST00000309546 PKN1Q16512 942 aa22.24■■□□□ 1.15
LIME1-201ENST00000309546 TJAP1Q5JTD0 557 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms