RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C YME1P32795 747 aa1.45□□□□□ -2.18
VPS54YDR027C MTR2P34232 184 aaKnown RBP1.45□□□□□ -2.18
VPS54YDR027C YKL100CP34248 587 aa1.45□□□□□ -2.18
VPS54YDR027C CMC1P36064 111 aa1.45□□□□□ -2.18
VPS54YDR027C MUM2P38236 366 aa1.45□□□□□ -2.18
VPS54YDR027C ICS2P38284 255 aa1.45□□□□□ -2.18
VPS54YDR027C CSM2P40465 213 aa1.45□□□□□ -2.18
VPS54YDR027C PYK2P52489 506 aaKnown RBP1.45□□□□□ -2.18
VPS54YDR027C TWF1P53250 332 aa1.45□□□□□ -2.18
VPS54YDR027C DRN1P53255 507 aaKnown RBP1.45□□□□□ -2.18
VPS54YDR027C MSO1P53604 210 aaKnown RBP1.45□□□□□ -2.18
VPS54YDR027C RQC1Q05468 723 aaKnown RBP1.45□□□□□ -2.18
VPS54YDR027C YDL007C-AQ2V2Q0 85 aa1.45□□□□□ -2.18
VPS54YDR027C PMD1P32634 1753 aa1.45□□□□□ -2.18
VPS54YDR027C HKR1P41809 1802 aa1.45□□□□□ -2.18
VPS54YDR027C PEP4P07267 405 aaKnown RBP1.44□□□□□ -2.18
VPS54YDR027C LPD1P09624 499 aaKnown RBP1.44□□□□□ -2.18
VPS54YDR027C NAT1P12945 854 aaKnown RBP1.44□□□□□ -2.18
VPS54YDR027C CLB1P24868 471 aa1.44□□□□□ -2.18
VPS54YDR027C ERV1P27882 189 aa1.44□□□□□ -2.18
VPS54YDR027C PXA2P34230 853 aa1.44□□□□□ -2.18
VPS54YDR027C MSR1P38714 643 aa1.44□□□□□ -2.18
VPS54YDR027C CIN4P39110 191 aa1.44□□□□□ -2.18
VPS54YDR027C VPS52P39904 641 aa1.44□□□□□ -2.18
VPS54YDR027C VMA13P41807 478 aaKnown RBP1.44□□□□□ -2.18
VPS54YDR027C SSU1P41930 458 aa1.44□□□□□ -2.18
VPS54YDR027C YGR127WP53275 312 aa1.44□□□□□ -2.18
VPS54YDR027C BUD32P53323 261 aa1.44□□□□□ -2.18
VPS54YDR027C DUG3P53871 357 aa1.44□□□□□ -2.18
VPS54YDR027C FIN1Q03898 291 aa1.44□□□□□ -2.18
VPS54YDR027C YDL057WQ07379 328 aa1.44□□□□□ -2.18
VPS54YDR027C SIL1Q08199 421 aa1.44□□□□□ -2.18
VPS54YDR027C YOR387CQ08910 206 aa1.44□□□□□ -2.18
VPS54YDR027C TY3A-GQ12173 290 aa1.44□□□□□ -2.18
VPS54YDR027C SEC39Q12745 709 aa1.44□□□□□ -2.18
VPS54YDR027C RRP12Q12754 1228 aaKnown RBP1.44□□□□□ -2.18
VPS54YDR027C TY3A-IQ99219 290 aa1.44□□□□□ -2.18
VPS54YDR027C SOD1P00445 154 aaKnown RBP1.44□□□□□ -2.18
VPS54YDR027C YCR051WP25631 222 aa1.44□□□□□ -2.18
VPS54YDR027C CDC60P26637 1090 aaKnown RBP1.44□□□□□ -2.18
VPS54YDR027C URA7P28274 579 aaKnown RBP1.44□□□□□ -2.18
VPS54YDR027C DPH2P32461 534 aa1.44□□□□□ -2.18
VPS54YDR027C SEC66P33754 206 aa1.44□□□□□ -2.18
VPS54YDR027C BLI1P35727 113 aa1.44□□□□□ -2.18
VPS54YDR027C ALG8P40351 577 aa1.44□□□□□ -2.18
VPS54YDR027C DLD2P46681 530 aaKnown RBP1.44□□□□□ -2.18
VPS54YDR027C TCB2P48231 1178 aa1.44□□□□□ -2.18
VPS54YDR027C YML6P51998 286 aa1.44□□□□□ -2.18
VPS54YDR027C YGR126WP53274 230 aa1.44□□□□□ -2.18
VPS54YDR027C YPL014WQ02606 381 aa1.44□□□□□ -2.18
VPS54YDR027C TAP42Q04372 366 aa1.44□□□□□ -2.18
VPS54YDR027C ROY1Q04847 553 aa1.44□□□□□ -2.18
VPS54YDR027C DIB1Q06819 143 aaPredicted RBP1.44□□□□□ -2.18
VPS54YDR027C NCE102Q12207 173 aaRIP-Chip data1.44□□□□□ -2.18not detected
VPS54YDR027C ISA2Q12425 185 aa1.44□□□□□ -2.18
VPS54YDR027C AFI1Q99222 893 aa1.44□□□□□ -2.18
VPS54YDR027C COR1P07256 457 aa1.43□□□□□ -2.18
VPS54YDR027C RPL31BP0C2H9 113 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C SPT15P13393 240 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C SNT1P25357 1226 aa1.43□□□□□ -2.18
VPS54YDR027C FUN19P28003 413 aaPredicted RBP1.43□□□□□ -2.18
VPS54YDR027C YIM1P28625 365 aa1.43□□□□□ -2.18
VPS54YDR027C PAP1P29468 568 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C PAD1P33751 242 aaKnown RBP RIP-Chip data1.43□□□□□ -2.18not detected
VPS54YDR027C LRP1P38801 184 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C SHO1P40073 367 aa1.43□□□□□ -2.18
VPS54YDR027C LCB2P40970 561 aa1.43□□□□□ -2.18
VPS54YDR027C SNG1P46950 547 aa1.43□□□□□ -2.18
VPS54YDR027C MNP1P53163 194 aaPredicted RBP1.43□□□□□ -2.18
VPS54YDR027C SMM1P53720 384 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C SXM1Q04175 944 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C MHR1Q06630 226 aa1.43□□□□□ -2.18
VPS54YDR027C SPB1P25582 841 aaPredicted RBP1.43□□□□□ -2.18
VPS54YDR027C PRS1P32895 427 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C YBL059WP34224 193 aa1.43□□□□□ -2.18
VPS54YDR027C OTU2P38747 307 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C NDT80P38830 627 aa1.43□□□□□ -2.18
VPS54YDR027C TIF4631P39935 952 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C ZIM17P42844 174 aa1.43□□□□□ -2.18
VPS54YDR027C YGR210CP42942 411 aa1.43□□□□□ -2.18
VPS54YDR027C SLG1P54867 378 aa1.43□□□□□ -2.18
VPS54YDR027C ETT1Q08421 412 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C RRD2Q12461 358 aa1.43□□□□□ -2.18
VPS54YDR027C YER078W-AQ3E7A2 54 aa1.43□□□□□ -2.18
VPS54YDR027C RAD52P06778 471 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C PRP2P20095 876 aaPredicted RBP1.43□□□□□ -2.18
VPS54YDR027C REC107P21651 314 aa1.43□□□□□ -2.18
VPS54YDR027C PUT3P25502 979 aaPredicted RBP1.43□□□□□ -2.18
VPS54YDR027C NAM9P27929 486 aa1.43□□□□□ -2.18
VPS54YDR027C SWI3P32591 825 aa1.43□□□□□ -2.18
VPS54YDR027C RML2P32611 393 aa1.43□□□□□ -2.18
VPS54YDR027C PEX5P35056 612 aa1.43□□□□□ -2.18
VPS54YDR027C APE4P38821 490 aa1.43□□□□□ -2.18
VPS54YDR027C YMR147WP40218 223 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C TIS11P47977 285 aa1.43□□□□□ -2.18
VPS54YDR027C YGL108CP53139 140 aa1.43□□□□□ -2.18
VPS54YDR027C RHO4Q00246 291 aa1.43□□□□□ -2.18
VPS54YDR027C TOF2Q02208 771 aa1.43□□□□□ -2.18
VPS54YDR027C RLI1Q03195 608 aaKnown RBP1.43□□□□□ -2.18
VPS54YDR027C GYL1Q04322 720 aa1.43□□□□□ -2.18
Retrieved 100 of 5,963 RNA–protein pairs in 1576.3 ms