RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 TCHHQ07283 1943 aa17.03■□□□□ 0.32
TRIM28-207ENST00000597136 KBTBD13C9JR72 458 aa17.02■□□□□ 0.32
TRIM28-207ENST00000597136 ASGR1P07306 291 aa17.02■□□□□ 0.32
TRIM28-207ENST00000597136 CST5P28325 142 aaPredicted RBP17.02■□□□□ 0.32
TRIM28-207ENST00000597136 ACLYP53396 1101 aa17.02■□□□□ 0.32
TRIM28-207ENST00000597136 MTMR1Q13613 665 aa17.02■□□□□ 0.32
TRIM28-207ENST00000597136 NONOQ15233 471 aaKnown RBP eCLIP17.02■□□□□ 0.32
TRIM28-207ENST00000597136 CELF3Q5SZQ8 465 aaKnown RBP17.02■□□□□ 0.32
TRIM28-207ENST00000597136 FAM173BQ6P4H8 233 aa17.02■□□□□ 0.32
TRIM28-207ENST00000597136 KCNV1Q6PIU1 500 aa17.02■□□□□ 0.32
TRIM28-207ENST00000597136 CYFIP1Q7L576 1253 aa17.02■□□□□ 0.32
TRIM28-207ENST00000597136 KRT25Q7Z3Z0 450 aa17.02■□□□□ 0.32
TRIM28-207ENST00000597136 NECAB2Q7Z6G3 386 aa17.02■□□□□ 0.32
TRIM28-207ENST00000597136 DHX37Q8IY37 1157 aaKnown RBP17.02■□□□□ 0.32
TRIM28-207ENST00000597136 GPRASP2Q96D09 838 aa17.02■□□□□ 0.32
TRIM28-207ENST00000597136 ATP6V1DQ9Y5K8 247 aa17.02■□□□□ 0.32
TRIM28-207ENST00000597136 CCDC194A0A1B0GVG4 234 aa17.02■□□□□ 0.31
TRIM28-207ENST00000597136 KCNA2P16389 499 aa17.02■□□□□ 0.31
TRIM28-207ENST00000597136 CAPN2P17655 700 aa17.02■□□□□ 0.31
TRIM28-207ENST00000597136 HSDL1Q3SXM5 330 aa17.02■□□□□ 0.31
TRIM28-207ENST00000597136 CXCL17Q6UXB2 119 aa17.02■□□□□ 0.31
TRIM28-207ENST00000597136 PLA2G4DQ86XP0 818 aa17.02■□□□□ 0.31
TRIM28-207ENST00000597136 C11orf49Q9H6J7 331 aa17.02■□□□□ 0.31
TRIM28-207ENST00000597136 PHF24Q9UPV7 400 aa17.02■□□□□ 0.31
TRIM28-207ENST00000597136 LOXHD1Q8IVV2 1947 aa17.01■□□□□ 0.31
TRIM28-207ENST00000597136 A6NJR5 290 aa17.01■□□□□ 0.31
TRIM28-207ENST00000597136 WNT7AO00755 349 aa17.01■□□□□ 0.31
TRIM28-207ENST00000597136 TDP2O95551 362 aa17.01■□□□□ 0.31
TRIM28-207ENST00000597136 CIITAP33076 1130 aa17.01■□□□□ 0.31
TRIM28-207ENST00000597136 USP11P51784 963 aa17.01■□□□□ 0.31
TRIM28-207ENST00000597136 ATN1P54259 1190 aaPredicted RBP17.01■□□□□ 0.31
TRIM28-207ENST00000597136 FOXD4L6Q3SYB3 417 aaPredicted RBP17.01■□□□□ 0.31
TRIM28-207ENST00000597136 FOXD4L3Q6VB84 417 aaPredicted RBP17.01■□□□□ 0.31
TRIM28-207ENST00000597136 PPP1R13LQ8WUF5 828 aa17.01■□□□□ 0.31
TRIM28-207ENST00000597136 LENG9Q96B70 501 aa17.01■□□□□ 0.31
TRIM28-207ENST00000597136 TSEN34Q9BSV6 310 aaKnown RBP17.01■□□□□ 0.31
TRIM28-207ENST00000597136 A0A1W2PQ45 241 aaPredicted RBP17■□□□□ 0.31
TRIM28-207ENST00000597136 A0A1W2PQY0 241 aa17■□□□□ 0.31
TRIM28-207ENST00000597136 ITGB3BPQ13352 177 aaPredicted RBP17■□□□□ 0.31
TRIM28-207ENST00000597136 LAMC2Q13753 1193 aa17■□□□□ 0.31
TRIM28-207ENST00000597136 PRR16Q569H4 304 aa17■□□□□ 0.31
TRIM28-207ENST00000597136 PCSK9Q8NBP7 692 aaKnown RBP17■□□□□ 0.31
TRIM28-207ENST00000597136 GJA10Q969M2 543 aa17■□□□□ 0.31
TRIM28-207ENST00000597136 MLXIPQ9HAP2 919 aa17■□□□□ 0.31
TRIM28-207ENST00000597136 AGO4Q9HCK5 861 aaKnown RBP17■□□□□ 0.31
TRIM28-207ENST00000597136 MAFGO15525 162 aa16.99■□□□□ 0.31
TRIM28-207ENST00000597136 MMP3P08254 477 aa16.99■□□□□ 0.31
TRIM28-207ENST00000597136 MYL3P08590 195 aa16.99■□□□□ 0.31
TRIM28-207ENST00000597136 TOB1P50616 345 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-207ENST00000597136 SP4Q02446 784 aa16.99■□□□□ 0.31
TRIM28-207ENST00000597136 NIPA1Q7RTP0 329 aa16.99■□□□□ 0.31
TRIM28-207ENST00000597136 EMID1Q96A84 441 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-207ENST00000597136 CHAMP1Q96JM3 812 aa16.99■□□□□ 0.31
TRIM28-207ENST00000597136 SPATA33Q96N06 139 aa16.99■□□□□ 0.31
TRIM28-207ENST00000597136 SENP7Q9BQF6 1050 aa16.99■□□□□ 0.31
TRIM28-207ENST00000597136 DHX15O43143 795 aaKnown RBP16.98■□□□□ 0.31
TRIM28-207ENST00000597136 CPT1AP50416 773 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 PSMC6P62333 389 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 PURAQ00577 322 aaKnown RBP16.98■□□□□ 0.31
TRIM28-207ENST00000597136 DNM1Q05193 864 aaKnown RBP16.98■□□□□ 0.31
TRIM28-207ENST00000597136 NEDD9Q14511 834 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 LRRC26Q2I0M4 334 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 LETM2Q2VYF4 491 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 SLC39A5Q6ZMH5 540 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 NEK8Q86SG6 692 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 CDHR1Q96JP9 859 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 GRIN2DO15399 1336 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 CYP3A7-CYP3A51PA0A087WV96 503 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 MOXD2PA6NHM9 499 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 MSH4O15457 936 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 SLC37A4O43826 429 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 CYP3A7P24462 503 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 TRAPPC10P48553 1259 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 RILPL1Q5EBL4 403 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 CLEC17AQ6ZS10 378 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 PPTC7Q8NI37 304 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 VTI1AQ96AJ9 217 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 MBOAT7Q96N66 472 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 PCDH10Q9P2E7 1040 aa16.98■□□□□ 0.31
TRIM28-207ENST00000597136 GSTTP1A0A1W2PQM5 241 aa16.97■□□□□ 0.31
TRIM28-207ENST00000597136 DDX39AO00148 427 aaKnown RBP16.97■□□□□ 0.31
TRIM28-207ENST00000597136 ATP2B1P20020 1258 aa16.97■□□□□ 0.31
TRIM28-207ENST00000597136 ATL3Q6DD88 541 aa16.97■□□□□ 0.31
TRIM28-207ENST00000597136 METTL7BQ6UX53 244 aa16.97■□□□□ 0.31
TRIM28-207ENST00000597136 ZNF396Q96N95 335 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-207ENST00000597136 GPR20Q99678 358 aa16.97■□□□□ 0.31
TRIM28-207ENST00000597136 TFIP11Q9UBB9 837 aaKnown RBP16.97■□□□□ 0.31
TRIM28-207ENST00000597136 NOL7Q9UMY1 257 aaKnown RBP16.97■□□□□ 0.31
TRIM28-207ENST00000597136 IPO5O00410 1097 aaKnown RBP16.96■□□□□ 0.31
TRIM28-207ENST00000597136 ZEB2O60315 1214 aa16.96■□□□□ 0.31
TRIM28-207ENST00000597136 CCNT1O60563 726 aaKnown RBP16.96■□□□□ 0.31
TRIM28-207ENST00000597136 PPFIA4O75335 1185 aa16.96■□□□□ 0.31
TRIM28-207ENST00000597136 BAG4O95429 457 aaKnown RBP16.96■□□□□ 0.31
TRIM28-207ENST00000597136 ZNF286BP0CG31 522 aa16.96■□□□□ 0.31
TRIM28-207ENST00000597136 MLLT1Q03111 559 aaPredicted RBP16.96■□□□□ 0.31
TRIM28-207ENST00000597136 Q4G0T1 1027 aa16.96■□□□□ 0.31
TRIM28-207ENST00000597136 KAT2BQ92831 832 aa16.96■□□□□ 0.31
TRIM28-207ENST00000597136 GLT1D1Q96MS3 346 aa16.96■□□□□ 0.31
TRIM28-207ENST00000597136 ZNF577Q9BSK1 485 aa16.96■□□□□ 0.31
TRIM28-207ENST00000597136 STARD7Q9NQZ5 370 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms