RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TMEM87BQ96K49 555 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 USP26Q9BXU7 913 aa19.76■□□□□ 0.75
CLN3-216ENST00000565316 PTPRSQ13332 1948 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 EMSYQ7Z589 1322 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 C17orf102A2RUQ5 167 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 LCHNA4D1U4 455 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 FIBPO43427 364 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 GTPBP6O43824 516 aaPredicted RBP19.75■□□□□ 0.75
CLN3-216ENST00000565316 GJB5O95377 273 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 SMIM10L2AP0DMW4 78 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 SMIM10L2BP0DMW5 78 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 LIFRP42702 1097 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 GNAQP50148 359 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 MKRN4PQ13434 485 aaPredicted RBP19.75■□□□□ 0.75
CLN3-216ENST00000565316 COL9A3Q14050 684 aaPredicted RBP19.75■□□□□ 0.75
CLN3-216ENST00000565316 IKBKEQ14164 716 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 PCNX4Q63HM2 1172 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 CYFIP1Q7L576 1253 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 TMCO2Q7Z6W1 182 aaPredicted RBP19.75■□□□□ 0.75
CLN3-216ENST00000565316 SRBD1Q8N5C6 995 aaKnown RBP19.75■□□□□ 0.75
CLN3-216ENST00000565316 RAD9AQ99638 391 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 GPR20Q99678 358 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 SENP7Q9BQF6 1050 aa19.75■□□□□ 0.75
CLN3-216ENST00000565316 NOP56O00567 594 aaKnown RBP19.74■□□□□ 0.75
CLN3-216ENST00000565316 SLC27A2O14975 620 aa19.74■□□□□ 0.75
CLN3-216ENST00000565316 LPXNO60711 386 aa19.74■□□□□ 0.75
CLN3-216ENST00000565316 LGR5O75473 907 aa19.74■□□□□ 0.75
CLN3-216ENST00000565316 PLEKHA8P1O95397 391 aa19.74■□□□□ 0.75
CLN3-216ENST00000565316 SPRED2Q7Z698 418 aa19.74■□□□□ 0.75
CLN3-216ENST00000565316 MICALL1Q8N3F8 863 aa19.74■□□□□ 0.75
CLN3-216ENST00000565316 SMARCC2Q8TAQ2 1214 aa19.74■□□□□ 0.75
CLN3-216ENST00000565316 ADAMTS19Q8TE59 1207 aa19.74■□□□□ 0.75
CLN3-216ENST00000565316 CUL5Q93034 780 aa19.74■□□□□ 0.75
CLN3-216ENST00000565316 ATP6V0A1Q93050 837 aa19.74■□□□□ 0.75
CLN3-216ENST00000565316 ESYT1Q9BSJ8 1104 aa19.74■□□□□ 0.75
CLN3-216ENST00000565316 RNPEPQ9H4A4 650 aa19.74■□□□□ 0.75
CLN3-216ENST00000565316 RTEL1Q9NZ71 1219 aa19.74■□□□□ 0.75
CLN3-216ENST00000565316 SEC63Q9UGP8 760 aaKnown RBP19.74■□□□□ 0.75
CLN3-216ENST00000565316 RSPH10B2B2RC85 870 aa19.73■□□□□ 0.75
CLN3-216ENST00000565316 RSPH10BP0C881 870 aa19.73■□□□□ 0.75
CLN3-216ENST00000565316 THPOP40225 353 aa19.73■□□□□ 0.75
CLN3-216ENST00000565316 GRB10Q13322 594 aa19.73■□□□□ 0.75
CLN3-216ENST00000565316 NECTIN1Q15223 517 aa19.73■□□□□ 0.75
CLN3-216ENST00000565316 ZBED2Q9BTP6 218 aa19.73■□□□□ 0.75
CLN3-216ENST00000565316 CCDC69A6NI79 296 aa19.72■□□□□ 0.75
CLN3-216ENST00000565316 TREHO43280 583 aa19.72■□□□□ 0.75
CLN3-216ENST00000565316 CAND2O75155 1236 aa19.72■□□□□ 0.75
CLN3-216ENST00000565316 CALM1P0DP23 149 aa19.72■□□□□ 0.75
CLN3-216ENST00000565316 CALM2P0DP24 149 aa19.72■□□□□ 0.75
CLN3-216ENST00000565316 CALM3P0DP25 149 aa19.72■□□□□ 0.75
CLN3-216ENST00000565316 BMP1P13497 986 aa19.72■□□□□ 0.75
CLN3-216ENST00000565316 CREB3L3Q68CJ9 461 aa19.72■□□□□ 0.75
CLN3-216ENST00000565316 KRT40Q6A162 431 aa19.72■□□□□ 0.75
CLN3-216ENST00000565316 NFXL1Q6ZNB6 911 aa19.72■□□□□ 0.75
CLN3-216ENST00000565316 ERVK-21P61565 698 aa19.71■□□□□ 0.75
CLN3-216ENST00000565316 ADAM17P78536 824 aa19.71■□□□□ 0.75
CLN3-216ENST00000565316 PLEKHG4Q58EX7 1191 aa19.71■□□□□ 0.75
CLN3-216ENST00000565316 NLRX1Q86UT6 975 aa19.71■□□□□ 0.75
CLN3-216ENST00000565316 DBF4BQ8NFT6 615 aa19.71■□□□□ 0.75
CLN3-216ENST00000565316 UHRF1Q96T88 793 aaPredicted RBP19.71■□□□□ 0.75
CLN3-216ENST00000565316 PSTPIP2Q9H939 334 aa19.71■□□□□ 0.75
CLN3-216ENST00000565316 LMCD1Q9NZU5 365 aa19.71■□□□□ 0.75
CLN3-216ENST00000565316 TELO2Q9Y4R8 837 aa19.71■□□□□ 0.75
CLN3-216ENST00000565316 RBAK-RBAKDNI3L0D1 243 aa19.7■□□□□ 0.74
CLN3-216ENST00000565316 GNAT1P11488 350 aa19.7■□□□□ 0.74
CLN3-216ENST00000565316 TFF2Q03403 129 aa19.7■□□□□ 0.74
CLN3-216ENST00000565316 AAK1Q2M2I8 961 aa19.7■□□□□ 0.74
CLN3-216ENST00000565316 SGMS1Q86VZ5 419 aa19.7■□□□□ 0.74
CLN3-216ENST00000565316 CMTR1Q8N1G2 835 aaKnown RBP19.7■□□□□ 0.74
CLN3-216ENST00000565316 GIMAP8Q8ND71 665 aaPredicted RBP19.7■□□□□ 0.74
CLN3-216ENST00000565316 GPRASP2Q96D09 838 aa19.7■□□□□ 0.74
CLN3-216ENST00000565316 SETD4Q9NVD3 440 aa19.7■□□□□ 0.74
CLN3-216ENST00000565316 COG5Q9UP83 839 aa19.7■□□□□ 0.74
CLN3-216ENST00000565316 LINC01553A4QN01 128 aa19.69■□□□□ 0.74
CLN3-216ENST00000565316 RXRAP19793 462 aa19.69■□□□□ 0.74
CLN3-216ENST00000565316 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.69■□□□□ 0.74
CLN3-216ENST00000565316 TMTC3Q6ZXV5 915 aa19.69■□□□□ 0.74
CLN3-216ENST00000565316 TRIM50Q86XT4 487 aa19.69■□□□□ 0.74
CLN3-216ENST00000565316 FANCBQ8NB91 859 aa19.69■□□□□ 0.74
CLN3-216ENST00000565316 IL27Q8NEV9 243 aa19.69■□□□□ 0.74
CLN3-216ENST00000565316 TGS1Q96RS0 853 aaKnown RBP19.69■□□□□ 0.74
CLN3-216ENST00000565316 ZNF215Q9UL58 517 aaPredicted RBP19.69■□□□□ 0.74
CLN3-216ENST00000565316 SLC12A7Q9Y666 1083 aa19.69■□□□□ 0.74
CLN3-216ENST00000565316 ATP9AO75110 1047 aa19.68■□□□□ 0.74
CLN3-216ENST00000565316 KCNA2P16389 499 aa19.68■□□□□ 0.74
CLN3-216ENST00000565316 ITGB5P18084 799 aa19.68■□□□□ 0.74
CLN3-216ENST00000565316 HTRA4P83105 476 aaPredicted RBP19.68■□□□□ 0.74
CLN3-216ENST00000565316 SKIV2LQ15477 1246 aaKnown RBP19.68■□□□□ 0.74
CLN3-216ENST00000565316 FAM26DQ5JW98 314 aa19.68■□□□□ 0.74
CLN3-216ENST00000565316 CDHR1Q96JP9 859 aa19.68■□□□□ 0.74
CLN3-216ENST00000565316 SUGCTQ9HAC7 445 aa19.68■□□□□ 0.74
CLN3-216ENST00000565316 INSL6Q9Y581 213 aa19.68■□□□□ 0.74
CLN3-216ENST00000565316 UBIAD1Q9Y5Z9 338 aa19.68■□□□□ 0.74
CLN3-216ENST00000565316 AMHP03971 560 aa19.67■□□□□ 0.74
CLN3-216ENST00000565316 BMP2KLQ5H9B9 411 aa19.67■□□□□ 0.74
CLN3-216ENST00000565316 UTP14CQ5TAP6 766 aaKnown RBP19.67■□□□□ 0.74
CLN3-216ENST00000565316 RPAINQ86UA6 219 aa19.67■□□□□ 0.74
CLN3-216ENST00000565316 SP7Q8TDD2 431 aaPredicted RBP19.67■□□□□ 0.74
CLN3-216ENST00000565316 GDPD5Q8WTR4 605 aa19.67■□□□□ 0.74
CLN3-216ENST00000565316 LMBR1Q8WVP7 490 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms