RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 CEP131Q9UPN4 1083 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 CLIC4Q9Y696 253 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 CENPFP49454 3210 aa13.12□□□□□ -0.31
YBX3-213ENST00000542641 TBX3O15119 743 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 NKRFO15226 690 aaKnown RBP eCLIP13.11□□□□□ -0.31
YBX3-213ENST00000542641 ADCY6O43306 1168 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 SORBS3O60504 671 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 GGPS1O95749 300 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 GH1P01241 217 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 RARBP10826 455 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 CCL5P13501 91 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 KCNA2P16389 499 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 DNM1Q05193 864 aaKnown RBP13.11□□□□□ -0.31
YBX3-213ENST00000542641 MTFR1Q15390 333 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 CELF3Q5SZQ8 465 aaKnown RBP13.11□□□□□ -0.31
YBX3-213ENST00000542641 GJC2Q5T442 439 aaPredicted RBP13.11□□□□□ -0.31
YBX3-213ENST00000542641 LRCH2Q5VUJ6 765 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 ATL3Q6DD88 541 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 CYFIP1Q7L576 1253 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 DHX37Q8IY37 1157 aaKnown RBP13.11□□□□□ -0.31
YBX3-213ENST00000542641 SLFN12Q8IYM2 578 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 C4orf32Q8N8J7 132 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 ETNPPLQ8TBG4 499 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 HAS1Q92839 578 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 COPS5Q92905 334 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 SLC5A5Q92911 643 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 GJA10Q969M2 543 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 LENG1Q96BZ8 264 aaPredicted RBP13.11□□□□□ -0.31
YBX3-213ENST00000542641 ZNF333Q96JL9 665 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 FAM20AQ96MK3 541 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 MTMR9Q96QG7 549 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 USP28Q96RU2 1077 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 RIT2Q99578 217 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 FTOQ9C0B1 505 aaKnown RBP eCLIP13.11□□□□□ -0.31
YBX3-213ENST00000542641 RNF208Q9H0X6 261 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 TMEM60Q9H2L4 133 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 MLXIPQ9HAP2 919 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 TBC1D22BQ9NU19 505 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 DDX20Q9UHI6 824 aaKnown RBP13.11□□□□□ -0.31
YBX3-213ENST00000542641 CFAP45Q9UL16 551 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 MCM3APO60318 1980 aa13.11□□□□□ -0.31
YBX3-213ENST00000542641 LRRC37A2A6NM11 1700 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 LAD1O00515 517 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 DHX15O43143 795 aaKnown RBP13.1□□□□□ -0.31
YBX3-213ENST00000542641 DYNC1LI2O43237 492 aaPredicted RBP13.1□□□□□ -0.31
YBX3-213ENST00000542641 MSCO60682 206 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 GAS7O60861 476 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 DUSP11O75319 330 aaKnown RBP13.1□□□□□ -0.31
YBX3-213ENST00000542641 BMP15O95972 392 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 OR52Z1P0C646 297 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 NCLP19338 710 aaKnown RBP13.1□□□□□ -0.31
YBX3-213ENST00000542641 PTGS1P23219 599 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 TXKP42681 527 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 ITGB3BPQ13352 177 aaPredicted RBP13.1□□□□□ -0.31
YBX3-213ENST00000542641 LAMC2Q13753 1193 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 OR6J1Q8NGC5 347 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.1□□□□□ -0.31
YBX3-213ENST00000542641 AP5M1Q9H0R1 490 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 BCAS3Q9H6U6 928 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 POLR3EQ9NVU0 708 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 TCEAL9Q9UHQ7 104 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 PCDHA12Q9UN75 941 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 GNEQ9Y223 722 aaKnown RBP13.1□□□□□ -0.31
YBX3-213ENST00000542641 Q9Y3F1 56 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 NFASCO94856 1347 aa13.1□□□□□ -0.31
YBX3-213ENST00000542641 DDX39AO00148 427 aaKnown RBP13.09□□□□□ -0.31
YBX3-213ENST00000542641 PSMD10O75832 226 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 FARP2O94887 1054 aaPredicted RBP13.09□□□□□ -0.31
YBX3-213ENST00000542641 NASPP49321 788 aaPredicted RBP13.09□□□□□ -0.31
YBX3-213ENST00000542641 KRT85P78386 507 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 ATP2C1P98194 919 aaPredicted RBP13.09□□□□□ -0.31
YBX3-213ENST00000542641 SP4Q02446 784 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 ARHGAP1Q07960 439 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 STK38Q15208 465 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 METTL7BQ6UX53 244 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 TLK2Q86UE8 772 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 CHAMP1Q96JM3 812 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 SPATA33Q96N06 139 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 PHF12Q96QT6 1004 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 TEKT3Q9BXF9 490 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 TTC12Q9H892 705 aaPredicted RBP13.09□□□□□ -0.31
YBX3-213ENST00000542641 SPC25Q9HBM1 224 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 JPH1Q9HDC5 661 aaPredicted RBP13.09□□□□□ -0.31
YBX3-213ENST00000542641 XPNPEP3Q9NQH7 507 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 PAK6Q9NQU5 681 aaPredicted RBP13.09□□□□□ -0.31
YBX3-213ENST00000542641 SLC9A2Q9UBY0 812 aa13.09□□□□□ -0.31
YBX3-213ENST00000542641 NOP56O00567 594 aaKnown RBP13.08□□□□□ -0.32
YBX3-213ENST00000542641 PYGBP11216 843 aa13.08□□□□□ -0.32
YBX3-213ENST00000542641 PRPHP41219 470 aa13.08□□□□□ -0.32
YBX3-213ENST00000542641 TECP42680 631 aa13.08□□□□□ -0.32
YBX3-213ENST00000542641 SLC39A14Q15043 492 aa13.08□□□□□ -0.32
YBX3-213ENST00000542641 PTPAQ15257 358 aa13.08□□□□□ -0.32
YBX3-213ENST00000542641 TMEM266Q2M3C6 531 aa13.08□□□□□ -0.32
YBX3-213ENST00000542641 COL13A1Q5TAT6 717 aaPredicted RBP13.08□□□□□ -0.32
YBX3-213ENST00000542641 LHX8Q68G74 356 aa13.08□□□□□ -0.32
YBX3-213ENST00000542641 DTHD1Q6ZMT9 781 aa13.08□□□□□ -0.32
YBX3-213ENST00000542641 LINC00301Q8NCQ3 95 aa13.08□□□□□ -0.32
YBX3-213ENST00000542641 AFG1LQ8WV93 481 aa13.08□□□□□ -0.32
YBX3-213ENST00000542641 TNPO1Q92973 898 aaKnown RBP13.08□□□□□ -0.32
YBX3-213ENST00000542641 EMID1Q96A84 441 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms