RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-223ENST00000494123 LAMC2Q13753 1193 aa16.47■□□□□ 0.23
BRCA1-223ENST00000494123 FOXD4L6Q3SYB3 417 aaPredicted RBP16.47■□□□□ 0.23
BRCA1-223ENST00000494123 BRDTQ58F21 947 aaPredicted RBP16.47■□□□□ 0.23
BRCA1-223ENST00000494123 CELF3Q5SZQ8 465 aaKnown RBP16.47■□□□□ 0.23
BRCA1-223ENST00000494123 LRCH2Q5VUJ6 765 aa16.47■□□□□ 0.23
BRCA1-223ENST00000494123 FOXD4L3Q6VB84 417 aaPredicted RBP16.47■□□□□ 0.23
BRCA1-223ENST00000494123 SLFN12Q8IYM2 578 aa16.47■□□□□ 0.23
BRCA1-223ENST00000494123 FAM20AQ96MK3 541 aa16.47■□□□□ 0.23
BRCA1-223ENST00000494123 SPATA33Q96N06 139 aa16.47■□□□□ 0.23
BRCA1-223ENST00000494123 ZNF396Q96N95 335 aaPredicted RBP16.47■□□□□ 0.23
BRCA1-223ENST00000494123 JPH1Q9HDC5 661 aaPredicted RBP16.47■□□□□ 0.23
BRCA1-223ENST00000494123 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.47■□□□□ 0.23
BRCA1-223ENST00000494123 CIZ1Q9ULV3 898 aaPredicted RBP16.47■□□□□ 0.23
BRCA1-223ENST00000494123 ATP6V1DQ9Y5K8 247 aa16.47■□□□□ 0.23
BRCA1-223ENST00000494123 NFASCO94856 1347 aa16.47■□□□□ 0.23
BRCA1-223ENST00000494123 NOP56O00567 594 aaKnown RBP16.46■□□□□ 0.23
BRCA1-223ENST00000494123 FARP2O94887 1054 aaPredicted RBP16.46■□□□□ 0.23
BRCA1-223ENST00000494123 PGK1P00558 417 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 SP4Q02446 784 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 ARHGAP1Q07960 439 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 LHX8Q68G74 356 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 METTL7BQ6UX53 244 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 TNS4Q8IZW8 715 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 ETNPPLQ8TBG4 499 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 U2AF1L4Q8WU68 220 aaKnown RBP16.46■□□□□ 0.23
BRCA1-223ENST00000494123 SLC5A5Q92911 643 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 RIT2Q99578 217 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 TEKT3Q9BXF9 490 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 KCNMB3Q9NPA1 279 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 CEP131Q9UPN4 1083 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 ZDHHC9Q9Y397 364 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 CENPFP49454 3210 aa16.46■□□□□ 0.23
BRCA1-223ENST00000494123 OR52Z1P0C646 297 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 CPT1AP50416 773 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 GJA9P57773 515 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 PTGDRQ13258 359 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 RNF180Q86T96 592 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 GJA10Q969M2 543 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 EMID1Q96A84 441 aaPredicted RBP16.45■□□□□ 0.22
BRCA1-223ENST00000494123 BCAS3Q9H6U6 928 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 SLC9A2Q9UBY0 812 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 SGPL1O95470 568 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 BMP15O95972 392 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 TFRCP02786 760 aaKnown RBP16.45■□□□□ 0.22
BRCA1-223ENST00000494123 TXKP42681 527 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 CEBPZQ03701 1054 aaKnown RBP16.45■□□□□ 0.22
BRCA1-223ENST00000494123 SF3A1Q15459 793 aaKnown RBP16.45■□□□□ 0.22
BRCA1-223ENST00000494123 ARRDC4Q8NCT1 418 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 ABHD8Q96I13 439 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 UPF3AQ9H1J1 476 aaKnown RBP16.45■□□□□ 0.22
BRCA1-223ENST00000494123 TMEM60Q9H2L4 133 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 CHMP5Q9NZZ3 219 aa16.45■□□□□ 0.22
BRCA1-223ENST00000494123 LAD1O00515 517 aa16.44■□□□□ 0.22
BRCA1-223ENST00000494123 DHX15O43143 795 aaKnown RBP16.44■□□□□ 0.22
BRCA1-223ENST00000494123 ZEB2O60315 1214 aa16.44■□□□□ 0.22
BRCA1-223ENST00000494123 ADAMTS4O75173 837 aa16.44■□□□□ 0.22
BRCA1-223ENST00000494123 BEX3Q00994 111 aa16.44■□□□□ 0.22
BRCA1-223ENST00000494123 KRT76Q01546 638 aa16.44■□□□□ 0.22
BRCA1-223ENST00000494123 FSCN1Q16658 493 aaKnown RBP16.44■□□□□ 0.22
BRCA1-223ENST00000494123 HSDL1Q3SXM5 330 aa16.44■□□□□ 0.22
BRCA1-223ENST00000494123 GNASQ5JWF2 1037 aa16.44■□□□□ 0.22
BRCA1-223ENST00000494123 PPTC7Q8NI37 304 aa16.44■□□□□ 0.22
BRCA1-223ENST00000494123 AFG1LQ8WV93 481 aa16.44■□□□□ 0.22
BRCA1-223ENST00000494123 HAS1Q92839 578 aa16.44■□□□□ 0.22
BRCA1-223ENST00000494123 CHMP2AO43633 222 aa16.43■□□□□ 0.22
BRCA1-223ENST00000494123 PSMD10O75832 226 aa16.43■□□□□ 0.22
BRCA1-223ENST00000494123 GJA8P48165 433 aa16.43■□□□□ 0.22
BRCA1-223ENST00000494123 TMEM266Q2M3C6 531 aa16.43■□□□□ 0.22
BRCA1-223ENST00000494123 MTMR9Q96QG7 549 aa16.43■□□□□ 0.22
BRCA1-223ENST00000494123 USP28Q96RU2 1077 aa16.43■□□□□ 0.22
BRCA1-223ENST00000494123 FTOQ9C0B1 505 aaKnown RBP eCLIP16.43■□□□□ 0.22
BRCA1-223ENST00000494123 TTC12Q9H892 705 aaPredicted RBP16.43■□□□□ 0.22
BRCA1-223ENST00000494123 OGDHLQ9ULD0 1010 aa16.43■□□□□ 0.22
BRCA1-223ENST00000494123 PCDHA12Q9UN75 941 aa16.43■□□□□ 0.22
BRCA1-223ENST00000494123 SAMM50Q9Y512 469 aa16.43■□□□□ 0.22
BRCA1-223ENST00000494123 CLIC4Q9Y696 253 aa16.43■□□□□ 0.22
BRCA1-223ENST00000494123 ELP1O95163 1332 aa16.43■□□□□ 0.22
BRCA1-223ENST00000494123 MYADML2A6NDP7 307 aa16.42■□□□□ 0.22
BRCA1-223ENST00000494123 A6NJR5 290 aa16.42■□□□□ 0.22
BRCA1-223ENST00000494123 KBTBD13C9JR72 458 aa16.42■□□□□ 0.22
BRCA1-223ENST00000494123 MMP3P08254 477 aa16.42■□□□□ 0.22
BRCA1-223ENST00000494123 NCLP19338 710 aaKnown RBP16.42■□□□□ 0.22
BRCA1-223ENST00000494123 IRX5P78411 483 aaPredicted RBP16.42■□□□□ 0.22
BRCA1-223ENST00000494123 ATP2C1P98194 919 aaPredicted RBP16.42■□□□□ 0.22
BRCA1-223ENST00000494123 LRRC41Q15345 812 aa16.42■□□□□ 0.22
BRCA1-223ENST00000494123 ATL3Q6DD88 541 aa16.42■□□□□ 0.22
BRCA1-223ENST00000494123 ZNF746Q6NUN9 644 aaPredicted RBP16.42■□□□□ 0.22
BRCA1-223ENST00000494123 PCSK9Q8NBP7 692 aaKnown RBP16.42■□□□□ 0.22
BRCA1-223ENST00000494123 GPR20Q99678 358 aa16.42■□□□□ 0.22
BRCA1-223ENST00000494123 CRISPLD2Q9H0B8 497 aa16.42■□□□□ 0.22
BRCA1-223ENST00000494123 POLR3EQ9NVU0 708 aa16.42■□□□□ 0.22
BRCA1-223ENST00000494123 TFIP11Q9UBB9 837 aaKnown RBP16.42■□□□□ 0.22
BRCA1-223ENST00000494123 CFAP45Q9UL16 551 aa16.42■□□□□ 0.22
BRCA1-223ENST00000494123 MYL3P08590 195 aa16.41■□□□□ 0.22
BRCA1-223ENST00000494123 CAPN2P17655 700 aa16.41■□□□□ 0.22
BRCA1-223ENST00000494123 CST5P28325 142 aaPredicted RBP16.41■□□□□ 0.22
BRCA1-223ENST00000494123 JAK3P52333 1124 aa16.41■□□□□ 0.22
BRCA1-223ENST00000494123 ACTR2P61160 394 aa16.41■□□□□ 0.22
BRCA1-223ENST00000494123 NKX3-2P78367 333 aa16.41■□□□□ 0.22
BRCA1-223ENST00000494123 DNM1Q05193 864 aaKnown RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms