RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 SMIM10L2BP0DMW5 78 aa15.31■□□□□ 0.04
CPSF4-210ENST00000469897 GNAQP50148 359 aa15.31■□□□□ 0.04
CPSF4-210ENST00000469897 MBTPS1Q14703 1052 aa15.31■□□□□ 0.04
CPSF4-210ENST00000469897 NECTIN1Q15223 517 aa15.31■□□□□ 0.04
CPSF4-210ENST00000469897 SKIV2LQ15477 1246 aaKnown RBP15.31■□□□□ 0.04
CPSF4-210ENST00000469897 UTP14CQ5TAP6 766 aaKnown RBP15.31■□□□□ 0.04
CPSF4-210ENST00000469897 CREB3L3Q68CJ9 461 aa15.31■□□□□ 0.04
CPSF4-210ENST00000469897 KRT40Q6A162 431 aa15.31■□□□□ 0.04
CPSF4-210ENST00000469897 SERINC5Q86VE9 423 aa15.31■□□□□ 0.04
CPSF4-210ENST00000469897 SKAP1Q86WV1 359 aa15.31■□□□□ 0.04
CPSF4-210ENST00000469897 GPR20Q99678 358 aa15.31■□□□□ 0.04
CPSF4-210ENST00000469897 LRRC2Q9BYS8 371 aa15.31■□□□□ 0.04
CPSF4-210ENST00000469897 TSPYL2Q9H2G4 693 aaPredicted RBP15.31■□□□□ 0.04
CPSF4-210ENST00000469897 SETD4Q9NVD3 440 aa15.31■□□□□ 0.04
CPSF4-210ENST00000469897 PIK3CDO00329 1044 aa15.3■□□□□ 0.04
CPSF4-210ENST00000469897 GTPBP6O43824 516 aaPredicted RBP15.3■□□□□ 0.04
CPSF4-210ENST00000469897 LGR5O75473 907 aa15.3■□□□□ 0.04
CPSF4-210ENST00000469897 POU3F3P20264 500 aaPredicted RBP15.3■□□□□ 0.04
CPSF4-210ENST00000469897 LIFRP42702 1097 aa15.3■□□□□ 0.04
CPSF4-210ENST00000469897 SP4Q02446 784 aa15.3■□□□□ 0.04
CPSF4-210ENST00000469897 PCNX4Q63HM2 1172 aa15.3■□□□□ 0.04
CPSF4-210ENST00000469897 FAM117BQ6P1L5 589 aa15.3■□□□□ 0.04
CPSF4-210ENST00000469897 METTL7BQ6UX53 244 aa15.3■□□□□ 0.04
CPSF4-210ENST00000469897 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.3■□□□□ 0.04
CPSF4-210ENST00000469897 DBF4BQ8NFT6 615 aa15.3■□□□□ 0.04
CPSF4-210ENST00000469897 PSTPIP2Q9H939 334 aa15.3■□□□□ 0.04
CPSF4-210ENST00000469897 ANO2Q9NQ90 1003 aa15.3■□□□□ 0.04
CPSF4-210ENST00000469897 SLC12A7Q9Y666 1083 aa15.3■□□□□ 0.04
CPSF4-210ENST00000469897 CHD9Q3L8U1 2897 aa15.29■□□□□ 0.04
CPSF4-210ENST00000469897 FRMPD4Q14CM0 1322 aa15.29■□□□□ 0.04
CPSF4-210ENST00000469897 TNFRSF10AO00220 468 aa15.29■□□□□ 0.04
CPSF4-210ENST00000469897 CALM1P0DP23 149 aa15.29■□□□□ 0.04
CPSF4-210ENST00000469897 CALM2P0DP24 149 aa15.29■□□□□ 0.04
CPSF4-210ENST00000469897 CALM3P0DP25 149 aa15.29■□□□□ 0.04
CPSF4-210ENST00000469897 TFF2Q03403 129 aa15.29■□□□□ 0.04
CPSF4-210ENST00000469897 GRB10Q13322 594 aa15.29■□□□□ 0.04
CPSF4-210ENST00000469897 XRRA1Q6P2D8 792 aa15.29■□□□□ 0.04
CPSF4-210ENST00000469897 NLRX1Q86UT6 975 aa15.29■□□□□ 0.04
CPSF4-210ENST00000469897 FANCBQ8NB91 859 aa15.29■□□□□ 0.04
CPSF4-210ENST00000469897 RAD9AQ99638 391 aa15.29■□□□□ 0.04
CPSF4-210ENST00000469897 OSBPL7Q9BZF2 842 aa15.29■□□□□ 0.04
CPSF4-210ENST00000469897 SCN10AQ9Y5Y9 1956 aa15.28■□□□□ 0.04
CPSF4-210ENST00000469897 EFCAB14O75071 495 aa15.28■□□□□ 0.04
CPSF4-210ENST00000469897 ATP9AO75110 1047 aa15.28■□□□□ 0.04
CPSF4-210ENST00000469897 GJB5O95377 273 aa15.28■□□□□ 0.04
CPSF4-210ENST00000469897 TRIM50Q86XT4 487 aa15.28■□□□□ 0.04
CPSF4-210ENST00000469897 ADAMTS19Q8TE59 1207 aa15.28■□□□□ 0.04
CPSF4-210ENST00000469897 SENP7Q9BQF6 1050 aa15.28■□□□□ 0.04
CPSF4-210ENST00000469897 LAMA4Q16363 1823 aa15.28■□□□□ 0.04
CPSF4-210ENST00000469897 LPXNO60711 386 aa15.27■□□□□ 0.04
CPSF4-210ENST00000469897 GNAT1P11488 350 aa15.27■□□□□ 0.04
CPSF4-210ENST00000469897 BMP1P13497 986 aa15.27■□□□□ 0.04
CPSF4-210ENST00000469897 ITGB5P18084 799 aa15.27■□□□□ 0.04
CPSF4-210ENST00000469897 HOXC8P31273 242 aa15.27■□□□□ 0.04
CPSF4-210ENST00000469897 UBE2SQ16763 222 aa15.27■□□□□ 0.04
CPSF4-210ENST00000469897 IL27Q8NEV9 243 aa15.27■□□□□ 0.04
CPSF4-210ENST00000469897 MTUS1Q9ULD2 1270 aa15.27■□□□□ 0.04
CPSF4-210ENST00000469897 VCANP13611 3396 aa15.27■□□□□ 0.04
CPSF4-210ENST00000469897 SPTBN5Q9NRC6 3674 aaKnown RBP15.27■□□□□ 0.03
CPSF4-210ENST00000469897 EMSYQ7Z589 1322 aa15.26■□□□□ 0.03
CPSF4-210ENST00000469897 CTSHP09668 335 aa15.26■□□□□ 0.03
CPSF4-210ENST00000469897 ARHGAP4P98171 946 aa15.26■□□□□ 0.03
CPSF4-210ENST00000469897 PLEKHG4Q58EX7 1191 aa15.26■□□□□ 0.03
CPSF4-210ENST00000469897 SYNE3Q6ZMZ3 975 aa15.26■□□□□ 0.03
CPSF4-210ENST00000469897 TMTC3Q6ZXV5 915 aa15.26■□□□□ 0.03
CPSF4-210ENST00000469897 GIMAP8Q8ND71 665 aaPredicted RBP15.26■□□□□ 0.03
CPSF4-210ENST00000469897 NEK1Q96PY6 1258 aa15.26■□□□□ 0.03
CPSF4-210ENST00000469897 UHRF1Q96T88 793 aaPredicted RBP15.26■□□□□ 0.03
CPSF4-210ENST00000469897 SUGCTQ9HAC7 445 aa15.26■□□□□ 0.03
CPSF4-210ENST00000469897 PKD2L1Q9P0L9 805 aa15.26■□□□□ 0.03
CPSF4-210ENST00000469897 PCDHA6Q9UN73 950 aa15.26■□□□□ 0.03
CPSF4-210ENST00000469897 PCDHA8Q9Y5H6 950 aa15.26■□□□□ 0.03
CPSF4-210ENST00000469897 PRUNE2Q8WUY3 3088 aa15.26■□□□□ 0.03
CPSF4-210ENST00000469897 GSTTP1A0A1W2PQM5 241 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 LINC01553A4QN01 128 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 AMHP03971 560 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 TCF7P36402 384 aaPredicted RBP15.25■□□□□ 0.03
CPSF4-210ENST00000469897 KCNQ1P51787 676 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 ERVK-21P61565 698 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 ADAM17P78536 824 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 HEATR3Q7Z4Q2 680 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 MICU3Q86XE3 530 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 MYOCDQ8IZQ8 938 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 SEPT1Q8WYJ6 367 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 GPRASP2Q96D09 838 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 TCEANC2Q96MN5 208 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 NECAB3Q96P71 396 aaPredicted RBP15.25■□□□□ 0.03
CPSF4-210ENST00000469897 TGS1Q96RS0 853 aaKnown RBP15.25■□□□□ 0.03
CPSF4-210ENST00000469897 ZNF215Q9UL58 517 aaPredicted RBP15.25■□□□□ 0.03
CPSF4-210ENST00000469897 BRPF3Q9ULD4 1205 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 INSL6Q9Y581 213 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 UBIAD1Q9Y5Z9 338 aa15.25■□□□□ 0.03
CPSF4-210ENST00000469897 SPDYE3A6NKU9 549 aa15.24■□□□□ 0.03
CPSF4-210ENST00000469897 UPP2O95045 317 aa15.24■□□□□ 0.03
CPSF4-210ENST00000469897 KCNA2P16389 499 aa15.24■□□□□ 0.03
CPSF4-210ENST00000469897 EXOSC10Q01780 885 aaKnown RBP15.24■□□□□ 0.03
CPSF4-210ENST00000469897 MKRN4PQ13434 485 aaPredicted RBP15.24■□□□□ 0.03
CPSF4-210ENST00000469897 AAK1Q2M2I8 961 aa15.24■□□□□ 0.03
CPSF4-210ENST00000469897 RNF20Q5VTR2 975 aa15.24■□□□□ 0.03
CPSF4-210ENST00000469897 SGMS1Q86VZ5 419 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms