RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 RTEL1Q9NZ71 1219 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 SLC9A2Q9UBY0 812 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 STK24Q9Y6E0 443 aa12.14□□□□□ -0.47
UBR4-208ENST00000459947 JAK2O60674 1132 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 RGS20O76081 388 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 GNAT1P11488 350 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 PURAQ00577 322 aaKnown RBP12.13□□□□□ -0.47
UBR4-208ENST00000459947 SLFN12Q8IYM2 578 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 SLC43A3Q8NBI5 491 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 JPH1Q9HDC5 661 aaPredicted RBP12.13□□□□□ -0.47
UBR4-208ENST00000459947 KCNH7Q9NS40 1196 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 H3BQV1 296 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 CTAGE5O15320 804 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 ARIH2O95376 493 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 KCNA2P16389 499 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 JAK3P52333 1124 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 LY6KQ17RY6 165 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 ANKRD33Q7Z3H0 272 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 TEKT3Q9BXF9 490 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 EMSYQ7Z589 1322 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 ITGB5P18084 799 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 ST3GAL1Q11201 340 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 BECN1Q14457 450 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 MIS18BP1Q6P0N0 1132 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 ZNF577Q9BSK1 485 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 SMARCAD1Q9H4L7 1026 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 AZI2Q9H6S1 392 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 KCNJ14Q9UNX9 436 aa12.13□□□□□ -0.47
UBR4-208ENST00000459947 KIAA0100Q14667 2235 aaKnown RBP12.13□□□□□ -0.47
UBR4-208ENST00000459947 DIS3LQ8TF46 1054 aaKnown RBP12.12□□□□□ -0.47
UBR4-208ENST00000459947 ADCY6O43306 1168 aa12.12□□□□□ -0.47
UBR4-208ENST00000459947 PARNO95453 639 aaKnown RBP12.12□□□□□ -0.47
UBR4-208ENST00000459947 PSEN2P49810 448 aa12.12□□□□□ -0.47
UBR4-208ENST00000459947 NPY5RQ15761 445 aa12.12□□□□□ -0.47
UBR4-208ENST00000459947 FAM167AQ96KS9 214 aa12.12□□□□□ -0.47
UBR4-208ENST00000459947 MARCH6O60337 910 aa12.12□□□□□ -0.47
UBR4-208ENST00000459947 F2P00734 622 aa12.12□□□□□ -0.47
UBR4-208ENST00000459947 ITGA7Q13683 1181 aa12.12□□□□□ -0.47
UBR4-208ENST00000459947 IPO5O00410 1097 aaKnown RBP12.12□□□□□ -0.47
UBR4-208ENST00000459947 BMP15O95972 392 aa12.12□□□□□ -0.47
UBR4-208ENST00000459947 BEX3Q00994 111 aa12.12□□□□□ -0.47
UBR4-208ENST00000459947 SEMA3FQ13275 785 aa12.12□□□□□ -0.47
UBR4-208ENST00000459947 LENG1Q96BZ8 264 aaPredicted RBP12.12□□□□□ -0.47
UBR4-208ENST00000459947 AIFM3Q96NN9 605 aa12.12□□□□□ -0.47
UBR4-208ENST00000459947 MYH7BA7E2Y1 1941 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 IGLV3-22A0A075B6J6 115 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 GJB2P29033 226 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 SLC5A5Q92911 643 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 GPR20Q99678 358 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 DDX25Q9UHL0 483 aaKnown RBP12.11□□□□□ -0.47
UBR4-208ENST00000459947 CAND2O75155 1236 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 LGR5O75473 907 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 PSAPP07602 524 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 CDK7P50613 346 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 MFSD10Q14728 455 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 PRR16Q569H4 304 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 PRPF38BQ5VTL8 546 aaKnown RBP12.11□□□□□ -0.47
UBR4-208ENST00000459947 PIK3AP1Q6ZUJ8 805 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 CYFIP1Q7L576 1253 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 RASGRP4Q8TDF6 673 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 COPS5Q92905 334 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 TNFRSF25Q93038 417 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 PGBD1Q96JS3 809 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 PPME1Q9Y570 386 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 MYADML2A6NDP7 307 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 WDR64B1ANS9 1081 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 GAS7O60861 476 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 HSP90AA1P07900 732 aaKnown RBP12.11□□□□□ -0.47
UBR4-208ENST00000459947 CLTBP09497 229 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 CXCL17Q6UXB2 119 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 PLPPR4Q7Z2D5 763 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 BRAPQ7Z569 592 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 NEK9Q8TD19 979 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 ERAP1Q9NZ08 941 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 ATP11BQ9Y2G3 1177 aa12.11□□□□□ -0.47
UBR4-208ENST00000459947 SCN10AQ9Y5Y9 1956 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 RRN3P2A6NIE6 340 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 HAS3O00219 553 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 LAD1O00515 517 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 LGALS2P05162 132 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 BFSP2Q13515 415 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 INF2Q27J81 1249 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 ZNF710Q8N1W2 664 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 LBHD1Q9BQE6 289 aaPredicted RBP12.1□□□□□ -0.47
UBR4-208ENST00000459947 COL1A2P08123 1366 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 KIAA0355O15063 1070 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 NOSTRINQ8IVI9 506 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 C7orf31Q8N865 590 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 LRRC26Q2I0M4 334 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 LETM2Q2VYF4 491 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 LARP1BQ659C4 914 aaKnown RBP12.1□□□□□ -0.47
UBR4-208ENST00000459947 C7orf61Q8IZ16 206 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 FERMT2Q96AC1 680 aa12.1□□□□□ -0.47
UBR4-208ENST00000459947 ATG7O95352 703 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 U2AF2P26368 475 aaKnown RBP eCLIP12.09□□□□□ -0.47
UBR4-208ENST00000459947 RFC2P35250 354 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 RILPL1Q5EBL4 403 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 LRCH2Q5VUJ6 765 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 CAGE1Q8TC20 777 aa12.09□□□□□ -0.47
UBR4-208ENST00000459947 AFAP1L1Q8TED9 768 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms