RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 AFG1LQ8WV93 481 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 KAT2BQ92831 832 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 CUL5Q93034 780 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 GJA10Q969M2 543 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 LENG9Q96B70 501 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 TMX3Q96JJ7 454 aa10.57□□□□□ -0.72
VPS35-206ENST00000565228 ORC3Q9UBD5 711 aaPredicted RBP10.57□□□□□ -0.72
VPS35-206ENST00000565228 hCG_1984214I3L0E3 225 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 CPLX1O14810 134 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 KCNA2P16389 499 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 CCND2P30279 289 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 ARHGAP4P98171 946 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 NR5A1Q13285 461 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 ITGB3BPQ13352 177 aaPredicted RBP10.56□□□□□ -0.72
VPS35-206ENST00000565228 FSCN1Q16658 493 aaKnown RBP10.56□□□□□ -0.72
VPS35-206ENST00000565228 HSDL1Q3SXM5 330 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 GNASQ5JWF2 1037 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 MYSM1Q5VVJ2 828 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 NECAB2Q7Z6G3 386 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 SH3RF1Q7Z6J0 888 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 ZNF713Q8N859 430 aaPredicted RBP10.56□□□□□ -0.72
VPS35-206ENST00000565228 DAGLBQ8NCG7 672 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 OR6J1Q8NGC5 347 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 SCFD2Q8WU76 684 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 CTAGE1Q96RT6 745 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 ALG1Q9BT22 464 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 Q9Y3F1 56 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 LTBP2Q14767 1821 aa10.56□□□□□ -0.72
VPS35-206ENST00000565228 A6NJR5 290 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 DHX15O43143 795 aaKnown RBP10.55□□□□□ -0.72
VPS35-206ENST00000565228 GGPS1O95749 300 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 MMP3P08254 477 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 CYP3A4P08684 503 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 CDK7P50613 346 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 MRPL12P52815 198 aaKnown RBP10.55□□□□□ -0.72
VPS35-206ENST00000565228 NLRP5P59047 1200 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 PURAQ00577 322 aaKnown RBP10.55□□□□□ -0.72
VPS35-206ENST00000565228 GUCY1B3Q02153 619 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 TRAF1Q13077 416 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 TTLL4Q14679 1199 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 TRIM60Q495X7 471 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 CELF3Q5SZQ8 465 aaKnown RBP10.55□□□□□ -0.72
VPS35-206ENST00000565228 BLIDQ8IZY5 108 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 SLC43A3Q8NBI5 491 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 ARRDC4Q8NCT1 418 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 MXRA8Q9BRK3 442 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 JADE2Q9NQC1 790 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 SH3GLB2Q9NR46 395 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 PKD2L1Q9P0L9 805 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 PCDHA4Q9UN74 947 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 MRVI1Q9Y6F6 885 aa10.55□□□□□ -0.72
VPS35-206ENST00000565228 GSTTP1A0A1W2PQM5 241 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 TRIM43BA6NCK2 446 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 SPDYE3A6NKU9 549 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 KIF28PB7ZC32 967 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 H0YGN5 161 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 MEIS1O00470 390 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 EIF5BO60841 1220 aaKnown RBP10.54□□□□□ -0.72
VPS35-206ENST00000565228 TDP2O95551 362 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 HOXD8P13378 290 aaPredicted RBP10.54□□□□□ -0.72
VPS35-206ENST00000565228 SYN1P17600 705 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 RTP1P59025 263 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 AKAP17AQ02040 695 aaKnown RBP10.54□□□□□ -0.72
VPS35-206ENST00000565228 AP3B2Q13367 1082 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 KRT40Q6A162 431 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 CYFIP1Q7L576 1253 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 RNF180Q86T96 592 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 TRIM22Q8IYM9 498 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 REXO1Q8N1G1 1221 aaKnown RBP10.54□□□□□ -0.72
VPS35-206ENST00000565228 EMID1Q96A84 441 aaPredicted RBP10.54□□□□□ -0.72
VPS35-206ENST00000565228 TRIM43Q96BQ3 446 aaPredicted RBP10.54□□□□□ -0.72
VPS35-206ENST00000565228 PCYT2Q99447 389 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 C16orf70Q9BSU1 422 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 TSEN34Q9BSV6 310 aaKnown RBP10.54□□□□□ -0.72
VPS35-206ENST00000565228 AGO4Q9HCK5 861 aaKnown RBP10.54□□□□□ -0.72
VPS35-206ENST00000565228 C6orf50Q9HD87 102 aa10.54□□□□□ -0.72
VPS35-206ENST00000565228 RBM27Q9P2N5 1060 aaKnown RBP10.54□□□□□ -0.72
VPS35-206ENST00000565228 BTBD18B2RXH4 712 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 KBTBD13C9JR72 458 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 CCNE2O96020 404 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 GH1P01241 217 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 ZNF286BP0CG31 522 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 CIITAP33076 1130 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 INF2Q27J81 1249 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 CEP55Q53EZ4 464 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 TRIM50Q86XT4 487 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 C7orf61Q8IZ16 206 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 TBCKQ8TEA7 893 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 VWCEQ96DN2 955 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 ZSCAN31Q96LW9 406 aaPredicted RBP10.53□□□□□ -0.72
VPS35-206ENST00000565228 MBOAT7Q96N66 472 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 GPR20Q99678 358 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 SH2B1Q9NRF2 756 aaPredicted RBP10.53□□□□□ -0.72
VPS35-206ENST00000565228 KCNH7Q9NS40 1196 aa10.53□□□□□ -0.72
VPS35-206ENST00000565228 ZMYND8Q9ULU4 1186 aaPredicted RBP10.53□□□□□ -0.72
VPS35-206ENST00000565228 SCN5AQ14524 2016 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 MOXD2PA6NHM9 499 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 HAS3O00219 553 aa10.52□□□□□ -0.73
VPS35-206ENST00000565228 NKRFO15226 690 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS35-206ENST00000565228 FIBPO43427 364 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms