RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, human

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP3-215	ENST00000533946	NCOA5	Q9HCD5	579 aa	Known RBP	11.13	□□□□□ -0.63
SSBP3-215	ENST00000533946	HDAC6	Q9UBN7	1215 aa		11.13	□□□□□ -0.63
SSBP3-215	ENST00000533946		V9GY48	417 aa	Predicted RBP	11.13	□□□□□ -0.63
SSBP3-215	ENST00000533946	LOC102724159	A0A0B4J2E5	919 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	EDIL3	O43854	480 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	CABYR	O75952	493 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	SEC24B	O95487	1268 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	ITGB5	P18084	799 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	CPT1A	P50416	773 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	SP4	Q02446	784 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	MBTPS1	Q14703	1052 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	PWP2	Q15269	919 aa	Known RBP	11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	CELF3	Q5SZQ8	465 aa	Known RBP	11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	TRAF7	Q6Q0C0	670 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	CYFIP1	Q7L576	1253 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	HEATR3	Q7Z4Q2	680 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	BRF1	Q92994	677 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	C16orf70	Q9BSU1	422 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	POLR3E	Q9NVU0	708 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	PNMA2	Q9UL42	364 aa		11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	YBX2	Q9Y2T7	364 aa	Known RBP	11.12	□□□□□ -0.63
SSBP3-215	ENST00000533946	SPATA31C2	B4DYI2	1134 aa		11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	STXBP3	O00186	592 aa		11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	HAS3	O00219	553 aa		11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	CCND2	P30279	289 aa		11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	PSEN2	P49810	448 aa		11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	TOB2	Q14106	344 aa	Predicted RBP	11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	GRIN2C	Q14957	1233 aa		11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	PKN1	Q16512	942 aa		11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	RTN1	Q16799	776 aa		11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	DHX37	Q8IY37	1157 aa	Known RBP	11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	MYLIP	Q8WY64	445 aa		11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	PHKB	Q93100	1093 aa		11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	SPATA33	Q96N06	139 aa		11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	CDX2	Q99626	313 aa	Predicted RBP	11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	USP26	Q9BXU7	913 aa		11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	IL23A	Q9NPF7	189 aa		11.11	□□□□□ -0.63
SSBP3-215	ENST00000533946	MROH7	Q68CQ1	1323 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	TANC1	Q9C0D5	1861 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	GOLGA8A	A7E2F4	631 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	GOLGA8B	A8MQT2	603 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	NKRF	O15226	690 aa	Known RBP eCLIP	11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	TLR3	O15455	904 aa	Known RBP	11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	ZBTB43	O43298	467 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	ZEB2	O60315	1214 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	HOXD8	P13378	290 aa	Predicted RBP	11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	RPS6KB1	P23443	525 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	KIF5B	P33176	963 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	CCT2	P78371	535 aa	Known RBP	11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	MFSD10	Q14728	455 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	NTRK3	Q16288	839 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	PTGIS	Q16647	500 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	KIAA0753	Q2KHM9	967 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	TRIM71	Q2Q1W2	868 aa	Known RBP	11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	SMARCC2	Q8TAQ2	1214 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	RASGRP4	Q8TDF6	673 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	EMID1	Q96A84	441 aa	Predicted RBP	11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	INPP4A	Q96PE3	977 aa	Predicted RBP	11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	MTA3	Q9BTC8	594 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	PBX4	Q9BYU1	374 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	UPF3B	Q9BZI7	483 aa	Known RBP	11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	PSTPIP2	Q9H939	334 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	PCDHA6	Q9UN73	950 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	PCDHA8	Q9Y5H6	950 aa		11.1	□□□□□ -0.63
SSBP3-215	ENST00000533946	GSTTP1	A0A1W2PQM5	241 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	PIK3CD	O00329	1044 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	NBN	O60934	754 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	F2	P00734	622 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	IQCF3	P0C7M6	154 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	AR	P10275	920 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	KCNA2	P16389	499 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	CAST	P20810	708 aa	Known RBP	11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	DNAJB2	P25686	324 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	SMARCA1	P28370	1054 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	PPIG	Q13427	754 aa	Known RBP eCLIP	11.09	□□□□□ -0.63	4e-9	■■□□□ 14.2
SSBP3-215	ENST00000533946	LAMC2	Q13753	1193 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	UTP14C	Q5TAP6	766 aa	Known RBP	11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	NFRKB	Q6P4R8	1299 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	TMTC2	Q8N394	836 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	USP38	Q8NB14	1042 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	PPTC7	Q8NI37	304 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	AIFM3	Q96NN9	605 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	PCYT2	Q99447	389 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	GPR20	Q99678	358 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	RNPEP	Q9H4A4	650 aa		11.09	□□□□□ -0.63
SSBP3-215	ENST00000533946	MUC3A	Q02505	3323 aa		11.08	□□□□□ -0.64
SSBP3-215	ENST00000533946	SI	P14410	1827 aa		11.08	□□□□□ -0.64
SSBP3-215	ENST00000533946	RFXAP	O00287	272 aa		11.08	□□□□□ -0.64
SSBP3-215	ENST00000533946	TREH	O43280	583 aa		11.08	□□□□□ -0.64
SSBP3-215	ENST00000533946	FGB	P02675	491 aa		11.08	□□□□□ -0.64
SSBP3-215	ENST00000533946	LGALS2	P05162	132 aa		11.08	□□□□□ -0.64
SSBP3-215	ENST00000533946	PDIA3	P30101	505 aa	Known RBP	11.08	□□□□□ -0.64
SSBP3-215	ENST00000533946	ICAM3	P32942	547 aa		11.08	□□□□□ -0.64
SSBP3-215	ENST00000533946	SMAD3	P84022	425 aa	Known RBP	11.08	□□□□□ -0.64
SSBP3-215	ENST00000533946	DGKD	Q16760	1214 aa		11.08	□□□□□ -0.64
SSBP3-215	ENST00000533946	RNF20	Q5VTR2	975 aa		11.08	□□□□□ -0.64
SSBP3-215	ENST00000533946	JAKMIP3	Q5VZ66	844 aa		11.08	□□□□□ -0.64
SSBP3-215	ENST00000533946	PCNX4	Q63HM2	1172 aa		11.08	□□□□□ -0.64
SSBP3-215	ENST00000533946	TMEM199	Q8N511	208 aa		11.08	□□□□□ -0.64

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