RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 PRR19A6NJB7 356 aa9.83□□□□□ -0.84
NUP54-215ENST00000514313 KCNK3O14649 394 aa9.83□□□□□ -0.84
NUP54-215ENST00000514313 TGM5O43548 720 aa9.83□□□□□ -0.84
NUP54-215ENST00000514313 PPP1R11O60927 126 aaPredicted RBP9.83□□□□□ -0.84
NUP54-215ENST00000514313 MAP4K4O95819 1239 aaPredicted RBP9.83□□□□□ -0.84
NUP54-215ENST00000514313 H2AFB1P0C5Y9 115 aa9.83□□□□□ -0.84
NUP54-215ENST00000514313 H2AFB2P0C5Z0 115 aa9.83□□□□□ -0.84
NUP54-215ENST00000514313 FOSL1P15407 271 aa9.83□□□□□ -0.84
NUP54-215ENST00000514313 CHPFQ8IZ52 775 aa9.83□□□□□ -0.84
NUP54-215ENST00000514313 ASB11Q8WXH4 323 aa9.83□□□□□ -0.84
NUP54-215ENST00000514313 TRMT2BQ96GJ1 504 aaKnown RBP9.83□□□□□ -0.84
NUP54-215ENST00000514313 HHIPL1Q96JK4 782 aa9.83□□□□□ -0.84
NUP54-215ENST00000514313 JMJD8Q96S16 334 aa9.83□□□□□ -0.84
NUP54-215ENST00000514313 GEMIN8Q9NWZ8 242 aaKnown RBP9.83□□□□□ -0.84
NUP54-215ENST00000514313 ADGRE2Q9UHX3 823 aa9.83□□□□□ -0.84
NUP54-215ENST00000514313 SPEF1Q9Y4P9 236 aa9.83□□□□□ -0.84
NUP54-215ENST00000514313 TCRBV5S4A2TA0A5A2 114 aa9.82□□□□□ -0.84
NUP54-215ENST00000514313 SLC12A8A0AV02 714 aa9.82□□□□□ -0.84
NUP54-215ENST00000514313 E2F8A0AVK6 867 aa9.82□□□□□ -0.84
NUP54-215ENST00000514313 FADS2P1A8MWK0 482 aa9.82□□□□□ -0.84
NUP54-215ENST00000514313 MT-CO1P00395 513 aa9.82□□□□□ -0.84
NUP54-215ENST00000514313 ZBTB48P10074 688 aaPredicted RBP9.82□□□□□ -0.84
NUP54-215ENST00000514313 COL6A2P12110 1019 aa9.82□□□□□ -0.84
NUP54-215ENST00000514313 SESN3P58005 492 aa9.82□□□□□ -0.84
NUP54-215ENST00000514313 GPR19Q15760 415 aa9.82□□□□□ -0.84
NUP54-215ENST00000514313 DDB1Q16531 1140 aa9.82□□□□□ -0.84
NUP54-215ENST00000514313 PTPN21Q16825 1174 aa9.82□□□□□ -0.84
NUP54-215ENST00000514313 AOC3Q16853 763 aa9.82□□□□□ -0.84
NUP54-215ENST00000514313 RELTQ969Z4 430 aa9.82□□□□□ -0.84
NUP54-215ENST00000514313 AHCYL2Q96HN2 611 aaKnown RBP9.82□□□□□ -0.84
NUP54-215ENST00000514313 TNFRSF10DQ9UBN6 386 aa9.82□□□□□ -0.84
NUP54-215ENST00000514313 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.81□□□□□ -0.84
NUP54-215ENST00000514313 H7C1D1 291 aa9.81□□□□□ -0.84
NUP54-215ENST00000514313 MYBL2P10244 700 aa9.81□□□□□ -0.84
NUP54-215ENST00000514313 HOXA10P31260 410 aaPredicted RBP9.81□□□□□ -0.84
NUP54-215ENST00000514313 IRF9Q00978 393 aa9.81□□□□□ -0.84
NUP54-215ENST00000514313 DOC2BQ14184 412 aa9.81□□□□□ -0.84
NUP54-215ENST00000514313 INAVAQ3KP66 663 aa9.81□□□□□ -0.84
NUP54-215ENST00000514313 PLA2G4EQ3MJ16 856 aa9.81□□□□□ -0.84
NUP54-215ENST00000514313 HABP4Q5JVS0 413 aaKnown RBP9.81□□□□□ -0.84
NUP54-215ENST00000514313 HHIPL2Q6UWX4 724 aa9.81□□□□□ -0.84
NUP54-215ENST00000514313 OTOP3Q7RTS5 596 aa9.81□□□□□ -0.84
NUP54-215ENST00000514313 SLCO6A1Q86UG4 719 aa9.81□□□□□ -0.84
NUP54-215ENST00000514313 PTRH1Q86Y79 214 aaKnown RBP9.81□□□□□ -0.84
NUP54-215ENST00000514313 EBF1Q9UH73 591 aa9.81□□□□□ -0.84
NUP54-215ENST00000514313 RWDD3Q9Y3V2 267 aa9.81□□□□□ -0.84
NUP54-215ENST00000514313 X6R8D5 127 aa9.81□□□□□ -0.84
NUP54-215ENST00000514313 C22orf46C9J442 243 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 NKRFO15226 690 aaKnown RBP eCLIP9.8□□□□□ -0.84
NUP54-215ENST00000514313 ABLIM3O94929 683 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 FUCA1P04066 466 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 GRIK1P39086 918 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 PRKCQQ04759 706 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 SPIRE1Q08AE8 756 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 BROXQ5VW32 411 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 ARHGAP36Q6ZRI8 547 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 NOSTRINQ8IVI9 506 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 MYO1HQ8N1T3 1032 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 PLEKHO2Q8TD55 490 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 EPB41L1Q9H4G0 881 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 C14orf119Q9NWQ9 140 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 FBLN5Q9UBX5 448 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 ZNF180Q9UJW8 692 aa9.8□□□□□ -0.84
NUP54-215ENST00000514313 FZD9O00144 591 aa9.79□□□□□ -0.84
NUP54-215ENST00000514313 DVL2O14641 736 aa9.79□□□□□ -0.84
NUP54-215ENST00000514313 USP2O75604 605 aaPredicted RBP9.79□□□□□ -0.84
NUP54-215ENST00000514313 ATF3P18847 181 aa9.79□□□□□ -0.84
NUP54-215ENST00000514313 SLC9A1P19634 815 aa9.79□□□□□ -0.84
NUP54-215ENST00000514313 CD96P40200 585 aa9.79□□□□□ -0.84
NUP54-215ENST00000514313 FAPQ12884 760 aa9.79□□□□□ -0.84
NUP54-215ENST00000514313 KLF1Q13351 362 aaPredicted RBP9.79□□□□□ -0.84
NUP54-215ENST00000514313 IKZF1Q13422 519 aa9.79□□□□□ -0.84
NUP54-215ENST00000514313 KIAA1958Q8N8K9 716 aa9.79□□□□□ -0.84
NUP54-215ENST00000514313 PIP4K2CQ8TBX8 421 aa9.79□□□□□ -0.84
NUP54-215ENST00000514313 SH3RF2Q8TEC5 729 aa9.79□□□□□ -0.84
NUP54-215ENST00000514313 LINC01599Q8WXQ3 324 aa9.79□□□□□ -0.84
NUP54-215ENST00000514313 FUBP3Q96I24 572 aaKnown RBP eCLIP9.79□□□□□ -0.84
NUP54-215ENST00000514313 MTA3Q9BTC8 594 aa9.79□□□□□ -0.84
NUP54-215ENST00000514313 RHOBTB2Q9BYZ6 727 aa9.79□□□□□ -0.84
NUP54-215ENST00000514313 CARS2Q9HA77 564 aaKnown RBP9.79□□□□□ -0.84
NUP54-215ENST00000514313 COA3Q9Y2R0 106 aaPredicted RBP9.79□□□□□ -0.84
NUP54-215ENST00000514313 MAN2B1O00754 1011 aa9.78□□□□□ -0.84
NUP54-215ENST00000514313 GNALP38405 381 aa9.78□□□□□ -0.84
NUP54-215ENST00000514313 GSK3AP49840 483 aa9.78□□□□□ -0.84
NUP54-215ENST00000514313 RASSF7Q02833 373 aa9.78□□□□□ -0.84
NUP54-215ENST00000514313 ZNF174Q15697 407 aa9.78□□□□□ -0.84
NUP54-215ENST00000514313 C14orf80Q86SX3 495 aa9.78□□□□□ -0.84
NUP54-215ENST00000514313 CAMKK2Q96RR4 588 aa9.78□□□□□ -0.84
NUP54-215ENST00000514313 MS4A5Q9H3V2 200 aa9.78□□□□□ -0.84
NUP54-215ENST00000514313 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.78□□□□□ -0.84
NUP54-215ENST00000514313 VAV3Q9UKW4 847 aa9.78□□□□□ -0.84
NUP54-215ENST00000514313 NOB1Q9ULX3 412 aaKnown RBP9.78□□□□□ -0.84
NUP54-215ENST00000514313 SPO11Q9Y5K1 396 aa9.78□□□□□ -0.84
NUP54-215ENST00000514313 A0A1W2PQ45 241 aaPredicted RBP9.77□□□□□ -0.85
NUP54-215ENST00000514313 A0A1W2PQY0 241 aa9.77□□□□□ -0.85
NUP54-215ENST00000514313 KIF3BO15066 747 aa9.77□□□□□ -0.85
NUP54-215ENST00000514313 PRPF3O43395 683 aaKnown RBP9.77□□□□□ -0.85
NUP54-215ENST00000514313 DGKIO75912 1065 aa9.77□□□□□ -0.85
NUP54-215ENST00000514313 DUSP4Q13115 394 aa9.77□□□□□ -0.85
NUP54-215ENST00000514313 TERF2Q15554 542 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms