RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TNFRSF12AQ9NP84 129 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 ACTR10Q9NZ32 417 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 INTUQ9ULD6 942 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 PPT2Q9UMR5 302 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 SCINQ9Y6U3 715 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 A0A087X0B3 334 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 AKAP10O43572 662 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 FOXD2O60548 495 aaPredicted RBP5.2□□□□□ -1.58
HMGB1-204ENST00000399489 TRIM13O60858 407 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 RASGRP1O95267 797 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 MAPKAPK2P49137 400 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 NFKB2Q00653 900 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 POU4F1Q01851 419 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 TMEM95Q3KNT9 176 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 ANKRD39Q53RE8 183 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 ZNF280DQ6N043 979 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 GGNQ86UU5 652 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 NIM1KQ8IY84 436 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 C20orf173Q96LM9 149 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 CRBNQ96SW2 442 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.2□□□□□ -1.58
HMGB1-204ENST00000399489 RTEL1Q9NZ71 1219 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 NRBP1Q9UHY1 535 aa5.2□□□□□ -1.58
HMGB1-204ENST00000399489 DBR1Q9UK59 544 aaKnown RBP5.2□□□□□ -1.58
HMGB1-204ENST00000399489 KDM2BQ8NHM5 1336 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 ZNF500O60304 480 aaPredicted RBP5.19□□□□□ -1.58
HMGB1-204ENST00000399489 BUB1BO60566 1050 aaPredicted RBP5.19□□□□□ -1.58
HMGB1-204ENST00000399489 PDE8AO60658 829 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 TBC1D8O95759 1140 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 SOX5P35711 763 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 NEK2P51955 445 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 C21orf62-AS1Q17RA5 79 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 INO80DQ53TQ3 878 aaPredicted RBP5.19□□□□□ -1.58
HMGB1-204ENST00000399489 CT47A1Q5JQC4 288 aaPredicted RBP5.19□□□□□ -1.58
HMGB1-204ENST00000399489 EFCAB2Q5VUJ9 269 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 TDRD10Q5VZ19 366 aaKnown RBP5.19□□□□□ -1.58
HMGB1-204ENST00000399489 RPTNQ6XPR3 784 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 FAM43BQ6ZT52 329 aaPredicted RBP5.19□□□□□ -1.58
HMGB1-204ENST00000399489 RNF180Q86T96 592 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 FAM129CQ86XR2 697 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 NINJ1Q92982 152 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 PWWP2AQ96N64 755 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 INO80BQ9C086 356 aaPredicted RBP5.19□□□□□ -1.58
HMGB1-204ENST00000399489 PFDN2Q9UHV9 154 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 ANAPC4Q9UJX5 808 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 LZTS1Q9Y250 596 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 FHOD1Q9Y613 1164 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 SLC12A7Q9Y666 1083 aa5.19□□□□□ -1.58
HMGB1-204ENST00000399489 MAN1A1P33908 653 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 GUCY2FP51841 1108 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 KIR3DS1Q14943 382 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 MAPRE1Q15691 268 aaKnown RBP5.18□□□□□ -1.58
HMGB1-204ENST00000399489 GRAMD1BQ3KR37 738 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 RTP2Q5QGT7 225 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 ACBD5Q5T8D3 534 aaPredicted RBP5.18□□□□□ -1.58
HMGB1-204ENST00000399489 BICRALQ6AI39 1079 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 PAQR3Q6TCH7 311 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 KSR2Q6VAB6 950 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 SPATC1Q76KD6 591 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 CHPFQ8IZ52 775 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 CXorf38Q8TB03 319 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 SLC12A9Q9BXP2 914 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 CDH19Q9H159 772 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 GP6Q9HCN6 339 aa5.18□□□□□ -1.58
HMGB1-204ENST00000399489 A0A0G2JLL6 359 aaPredicted RBP5.17□□□□□ -1.58
HMGB1-204ENST00000399489 C9IYK1 514 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 H0Y8X5 98 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 TBX3O15119 743 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 KATNA1O75449 491 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 CYBBP04839 570 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 HSP90AA1P07900 732 aaKnown RBP5.17□□□□□ -1.58
HMGB1-204ENST00000399489 FAM163BP0C2L3 166 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 COL6A1P12109 1028 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 GUCY2CP25092 1073 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 GIPRP48546 466 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 PIN1Q13526 163 aaPredicted RBP5.17□□□□□ -1.58
HMGB1-204ENST00000399489 PLEKHN1Q494U1 663 aaPredicted RBP5.17□□□□□ -1.58
HMGB1-204ENST00000399489 AXDND1Q5T1B0 1012 aaPredicted RBP5.17□□□□□ -1.58
HMGB1-204ENST00000399489 SLC4A10Q6U841 1118 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 CABP7Q86V35 215 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 TMEFF1Q8IYR6 380 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 IFNL3Q8IZI9 196 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 CNPY4Q8N129 248 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 AFAP1L2Q8N4X5 818 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 FIBCD1Q8N539 461 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 UBR7Q8N806 425 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 FBXO41Q8TF61 875 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 E2F7Q96AV8 911 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 PTPRHQ9HD43 1115 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 LUC7LQ9NQ29 371 aaKnown RBP5.17□□□□□ -1.58
HMGB1-204ENST00000399489 PDLIM7Q9NR12 457 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 TAGLN3Q9UI15 199 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 DIS3Q9Y2L1 958 aaKnown RBP5.17□□□□□ -1.58
HMGB1-204ENST00000399489 PCDHA5Q9Y5H7 936 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 NISCHQ9Y2I1 1504 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 A0A087WZG4 1122 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 NPHP1O15259 732 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 GJB6O95452 261 aa5.17□□□□□ -1.58
HMGB1-204ENST00000399489 TP53P04637 393 aaPredicted RBP5.17□□□□□ -1.58
HMGB1-204ENST00000399489 ACRP10323 421 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms