RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 RFC1P35251 1148 aaPredicted RBP17.29■□□□□ 0.36
COL17A1-202ENST00000369733 RCN2Q14257 317 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 BSPRYQ5W0U4 402 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 LTKP29376 864 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 HADHQ16836 314 aaKnown RBP17.29■□□□□ 0.36
COL17A1-202ENST00000369733 NUGGCQ68CJ6 796 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.29■□□□□ 0.36
COL17A1-202ENST00000369733 PRR36Q9H6K5 1346 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 ATP10DQ9P241 1426 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 LRRN2O75325 713 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 KRT19P08727 400 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 FBXO41Q8TF61 875 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 HVCN1Q96D96 273 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 EMILIN3Q9NT22 766 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 ADCY10Q96PN6 1610 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 FGGP02679 453 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 MFAP3P55082 362 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 NEDD4P46934 1319 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 WDR19Q8NEZ3 1342 aa17.29■□□□□ 0.36
COL17A1-202ENST00000369733 TTC26A0AVF1 554 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 STAM2O75886 525 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 POLE2P56282 527 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 MRPS9P82933 396 aaKnown RBP17.28■□□□□ 0.36
COL17A1-202ENST00000369733 BEND6Q5SZJ8 279 aaPredicted RBP17.28■□□□□ 0.36
COL17A1-202ENST00000369733 ALKBH5Q6P6C2 394 aaKnown RBP17.28■□□□□ 0.36
COL17A1-202ENST00000369733 NYAP1Q6ZVC0 841 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 ESYT3A0FGR9 886 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 CLIC2O15247 247 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 LLGL1Q15334 1064 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 ODR4Q5SWX8 454 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 OXER1Q8TDS5 423 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 PLEKHG1Q9ULL1 1385 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 NCK2O43639 380 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 MYCNP04198 464 aaPredicted RBP17.28■□□□□ 0.36
COL17A1-202ENST00000369733 DLATP10515 647 aaKnown RBP17.28■□□□□ 0.36
COL17A1-202ENST00000369733 SKIP12755 728 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 MFSD14BQ5SR56 506 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 USP40Q9NVE5 1235 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 TACC3Q9Y6A5 838 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 LRRC53A6NM62 1247 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 MAPK4P31152 587 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 BTDP43251 543 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 SLC8A3P57103 927 aa17.28■□□□□ 0.36
COL17A1-202ENST00000369733 METTL16Q86W50 562 aaKnown RBP17.28■□□□□ 0.36
COL17A1-202ENST00000369733 DDX17Q92841 729 aaKnown RBP17.28■□□□□ 0.36
COL17A1-202ENST00000369733 MAGOHP61326 146 aaKnown RBP17.27■□□□□ 0.36
COL17A1-202ENST00000369733 GFPT1Q06210 699 aaPredicted RBP17.27■□□□□ 0.36
COL17A1-202ENST00000369733 STRBPQ96SI9 672 aaKnown RBP17.27■□□□□ 0.36
COL17A1-202ENST00000369733 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.27■□□□□ 0.36
COL17A1-202ENST00000369733 IGKV5-2P06315 115 aa17.27■□□□□ 0.36
COL17A1-202ENST00000369733 YWHAGP61981 247 aaKnown RBP eCLIP17.27■□□□□ 0.36
COL17A1-202ENST00000369733 CDAN1Q8IWY9 1227 aa17.27■□□□□ 0.36
COL17A1-202ENST00000369733 PARP9Q8IXQ6 854 aa17.27■□□□□ 0.36
COL17A1-202ENST00000369733 CPXCR1Q8N123 301 aa17.27■□□□□ 0.36
COL17A1-202ENST00000369733 DDX27Q96GQ7 796 aaKnown RBP17.27■□□□□ 0.36
COL17A1-202ENST00000369733 VCX3AQ9NNX9 186 aa17.27■□□□□ 0.36
COL17A1-202ENST00000369733 INHBAP08476 426 aa17.27■□□□□ 0.36
COL17A1-202ENST00000369733 CDC27P30260 824 aa17.27■□□□□ 0.36
COL17A1-202ENST00000369733 HOXA7P31268 230 aaPredicted RBP17.27■□□□□ 0.36
COL17A1-202ENST00000369733 PPP2R2AP63151 447 aa17.27■□□□□ 0.36
COL17A1-202ENST00000369733 SEPT2Q15019 361 aa17.27■□□□□ 0.36
COL17A1-202ENST00000369733 ZNF449Q6P9G9 518 aa17.27■□□□□ 0.36
COL17A1-202ENST00000369733 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.27■□□□□ 0.36
COL17A1-202ENST00000369733 SART1O43290 800 aaKnown RBP17.27■□□□□ 0.35
COL17A1-202ENST00000369733 PFDN1O60925 122 aa17.27■□□□□ 0.35
COL17A1-202ENST00000369733 VTI1AQ96AJ9 217 aa17.27■□□□□ 0.35
COL17A1-202ENST00000369733 ATP6V1G3Q96LB4 118 aa17.27■□□□□ 0.35
COL17A1-202ENST00000369733 CLTCL1P53675 1640 aa17.27■□□□□ 0.35
COL17A1-202ENST00000369733 CYP2D7A0A087X1C5 515 aa17.27■□□□□ 0.35
COL17A1-202ENST00000369733 KRT81Q14533 505 aa17.27■□□□□ 0.35
COL17A1-202ENST00000369733 VIPAS39Q9H9C1 493 aa17.27■□□□□ 0.35
COL17A1-202ENST00000369733 PCDHA1Q9Y5I3 950 aa17.27■□□□□ 0.35
COL17A1-202ENST00000369733 MAP3K7O43318 606 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 MCAMP43121 646 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 FBXO11Q86XK2 927 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 PIGSQ96S52 555 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 FAF1Q9UNN5 650 aaPredicted RBP17.26■□□□□ 0.35
COL17A1-202ENST00000369733 SGK1O00141 431 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 GAP43P17677 238 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 CEP72Q9P209 647 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 PARP3Q9Y6F1 533 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 HDLBPQ00341 1268 aaKnown RBP17.26■□□□□ 0.35
COL17A1-202ENST00000369733 TRIP13Q15645 432 aaPredicted RBP17.26■□□□□ 0.35
COL17A1-202ENST00000369733 NXNQ6DKJ4 435 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 SLC24A3Q9HC58 644 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 TET3O43151 1660 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 UBN2Q6ZU65 1347 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 YWHAEP62258 255 aaKnown RBP17.26■□□□□ 0.35
COL17A1-202ENST00000369733 HSP90AA5PQ58FG0 334 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 TUBB6Q9BUF5 446 aa17.26■□□□□ 0.35
COL17A1-202ENST00000369733 ACSL3O95573 720 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 KLC4Q9NSK0 619 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 YEATS2Q9ULM3 1422 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 H7C1W4 665 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 PTK2Q05397 1052 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 TMTC3Q6ZXV5 915 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 NT5C1BQ96P26 610 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 TSC22D3Q99576 134 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 LY9Q9HBG7 655 aa17.25■□□□□ 0.35
COL17A1-202ENST00000369733 STOX1Q6ZVD7 989 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms