RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 STAMBPL1Q96FJ0 436 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 ZMYND12Q9H0C1 365 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 STMN3Q9NZ72 180 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 ATP8B3O60423 1300 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 MFAP3P55082 362 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 FBXW4P57775 412 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 RASSF10A6NK89 507 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 PODXLO00592 558 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 GTPBP6O43824 516 aaPredicted RBP10.02□□□□□ -0.81
VPS13A-203ENST00000360280 EIF6P56537 245 aaKnown RBP10.02□□□□□ -0.81
VPS13A-203ENST00000360280 BASP1P80723 227 aaKnown RBP10.02□□□□□ -0.81
VPS13A-203ENST00000360280 CPSF3Q9UKF6 684 aaKnown RBP10.02□□□□□ -0.81
VPS13A-203ENST00000360280 RPN1P04843 607 aaKnown RBP10.02□□□□□ -0.81
VPS13A-203ENST00000360280 SPARCL1Q14515 664 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 SLC12A6Q9UHW9 1150 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 TMOD1P28289 359 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 CCDC15Q0P6D6 951 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 E2F4Q16254 413 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 SPATA1Q5VX52 437 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 CAPRIN2Q6IMN6 1127 aaKnown RBP10.02□□□□□ -0.81
VPS13A-203ENST00000360280 VPS39Q96JC1 886 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 ITM2BQ9Y287 266 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 RTCBQ9Y3I0 505 aaKnown RBP10.02□□□□□ -0.81
VPS13A-203ENST00000360280 CFBP00751 764 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 NUGGCQ68CJ6 796 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 KCTD6Q8NC69 237 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 GLG1Q92896 1179 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 MTRQ99707 1265 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 VPS54Q9P1Q0 977 aa10.02□□□□□ -0.81
VPS13A-203ENST00000360280 DDX25Q9UHL0 483 aaKnown RBP10.02□□□□□ -0.81
VPS13A-203ENST00000360280 PLS3P13797 630 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 PHF21AQ96BD5 680 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 LMCD1Q9NZU5 365 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 ZNF711Q9Y462 761 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 SYNGAP1Q96PV0 1343 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 PCDH11XQ9BZA7 1347 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 PCDH11YQ9BZA8 1340 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 LZTS3O60299 673 aaPredicted RBP10.01□□□□□ -0.81
VPS13A-203ENST00000360280 ARL4AP40617 200 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 ADAM9Q13443 819 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 ACBD5Q5T8D3 534 aaPredicted RBP10.01□□□□□ -0.81
VPS13A-203ENST00000360280 DHX9Q08211 1270 aaKnown RBP10.01□□□□□ -0.81
VPS13A-203ENST00000360280 SNX19Q92543 992 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 MED23Q9ULK4 1368 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 FOXO3O43524 673 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 DEFA1P59665 94 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 DEFA3P59666 94 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 KIF22Q14807 665 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 DEPDC1Q5TB30 811 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 BZW1Q7L1Q6 419 aaKnown RBP10.01□□□□□ -0.81
VPS13A-203ENST00000360280 TSC22D4Q9Y3Q8 395 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 XPOTO43592 962 aaKnown RBP10.01□□□□□ -0.81
VPS13A-203ENST00000360280 CA4P22748 312 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 TTLL11Q8NHH1 800 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 CCDC90BQ9GZT6 254 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 TBC1D23Q9NUY8 699 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 ADCY1Q08828 1119 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 DARS2Q6PI48 645 aaKnown RBP10.01□□□□□ -0.81
VPS13A-203ENST00000360280 CCNYQ8ND76 341 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 ANKRD36BP1Q96IX9 119 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 ARHGEF16Q5VV41 709 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 ZNF274Q96GC6 653 aaPredicted RBP10.01□□□□□ -0.81
VPS13A-203ENST00000360280 KPNA7A9QM74 516 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 HSPD1P10809 573 aaKnown RBP10.01□□□□□ -0.81
VPS13A-203ENST00000360280 RAB14P61106 215 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 PHACTR3Q96KR7 559 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 ATP8A2Q9NTI2 1148 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 SLC4A7Q9Y6M7 1214 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 RGS12O14924 1447 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 CASP14P31944 242 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 ZMYM6O95789 1325 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 SGSM2O43147 1006 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 KRT1P04264 644 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 MESDQ14696 234 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 CDC26Q8NHZ8 85 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 LCMT1Q9UIC8 334 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 SLC9A1P19634 815 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 PDE6BP35913 854 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 TRAF7Q6Q0C0 670 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 MPP6Q9NZW5 540 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 ARHGEF12Q9NZN5 1544 aa10.01□□□□□ -0.81
VPS13A-203ENST00000360280 SH3GL2Q99962 352 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 MRPS26Q9BYN8 205 aaKnown RBP10□□□□□ -0.81
VPS13A-203ENST00000360280 PCDHB4Q9Y5E5 795 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 GUCY1A3Q02108 690 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 ZNF653Q96CK0 615 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 DONSONQ9NYP3 566 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 IRX1P78414 480 aaPredicted RBP10□□□□□ -0.81
VPS13A-203ENST00000360280 AP1B1Q10567 949 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 C1orf146Q5VVC0 180 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 BLIDQ8IZY5 108 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 SLC8A2Q9UPR5 921 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 ANXA1P04083 346 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 SRGAP2CP0DJJ0 459 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 TFAP4Q01664 338 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 RSRC2Q7L4I2 434 aaKnown RBP10□□□□□ -0.81
VPS13A-203ENST00000360280 CNPY4Q8N129 248 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 SMCO2A6NFE2 343 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 TNNI3KQ59H18 835 aa10□□□□□ -0.81
VPS13A-203ENST00000360280 NT5C1BQ96P26 610 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 131.9 ms