RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 USP17L6PQ6QN14 398 aa22.52■■□□□ 1.2
LIME1-201ENST00000309546 C7orf31Q8N865 590 aa22.52■■□□□ 1.2
LIME1-201ENST00000309546 HDAC6Q9UBN7 1215 aa22.52■■□□□ 1.2
LIME1-201ENST00000309546 MSRAQ9UJ68 235 aa22.52■■□□□ 1.2
LIME1-201ENST00000309546 SLC4A7Q9Y6M7 1214 aa22.52■■□□□ 1.2
LIME1-201ENST00000309546 FRMPD4Q14CM0 1322 aa22.52■■□□□ 1.2
LIME1-201ENST00000309546 IQCF3P0C7M6 154 aa22.51■■□□□ 1.19
LIME1-201ENST00000309546 SP2Q02086 613 aa22.51■■□□□ 1.19
LIME1-201ENST00000309546 KIAA0753Q2KHM9 967 aa22.51■■□□□ 1.19
LIME1-201ENST00000309546 HSDL1Q3SXM5 330 aa22.51■■□□□ 1.19
LIME1-201ENST00000309546 GNPTABQ3T906 1256 aa22.51■■□□□ 1.19
LIME1-201ENST00000309546 SESTD1Q86VW0 696 aa22.51■■□□□ 1.19
LIME1-201ENST00000309546 CCDC82Q8N4S0 544 aa22.51■■□□□ 1.19
LIME1-201ENST00000309546 CCDC155Q8N6L0 562 aa22.51■■□□□ 1.19
LIME1-201ENST00000309546 VWCEQ96DN2 955 aa22.51■■□□□ 1.19
LIME1-201ENST00000309546 TCEANC2Q96MN5 208 aa22.51■■□□□ 1.19
LIME1-201ENST00000309546 MLXIPQ9HAP2 919 aa22.51■■□□□ 1.19
LIME1-201ENST00000309546 GTF2IRD1Q9UHL9 959 aa22.51■■□□□ 1.19
LIME1-201ENST00000309546 CDH23Q9H251 3354 aa22.5■■□□□ 1.19
LIME1-201ENST00000309546 hCG_1642624A0A1W2PR95 340 aa22.5■■□□□ 1.19
LIME1-201ENST00000309546 F2P00734 622 aa22.5■■□□□ 1.19
LIME1-201ENST00000309546 TGFB3P10600 412 aa22.5■■□□□ 1.19
LIME1-201ENST00000309546 RFC2P35250 354 aa22.5■■□□□ 1.19
LIME1-201ENST00000309546 MRPS9P82933 396 aaKnown RBP22.5■■□□□ 1.19
LIME1-201ENST00000309546 SYNE3Q6ZMZ3 975 aa22.5■■□□□ 1.19
LIME1-201ENST00000309546 NEK1Q96PY6 1258 aa22.5■■□□□ 1.19
LIME1-201ENST00000309546 FTOQ9C0B1 505 aaKnown RBP eCLIP22.5■■□□□ 1.192e-7■□□□□ 8.6
LIME1-201ENST00000309546 NKX2-4Q9H2Z4 354 aa22.5■■□□□ 1.19
LIME1-201ENST00000309546 RTEL1Q9NZ71 1219 aa22.5■■□□□ 1.19
LIME1-201ENST00000309546 ACTN1P12814 892 aa22.49■■□□□ 1.19
LIME1-201ENST00000309546 RABGGTBP53611 331 aa22.49■■□□□ 1.19
LIME1-201ENST00000309546 CAGE1Q8TC20 777 aa22.49■■□□□ 1.19
LIME1-201ENST00000309546 CCDC136Q96JN2 1154 aa22.49■■□□□ 1.19
LIME1-201ENST00000309546 CTAGE1Q96RT6 745 aa22.49■■□□□ 1.19
LIME1-201ENST00000309546 DLL1O00548 723 aa22.48■■□□□ 1.19
LIME1-201ENST00000309546 PPFIA4O75335 1185 aa22.48■■□□□ 1.19
LIME1-201ENST00000309546 ATP2A2P16615 1042 aaKnown RBP22.48■■□□□ 1.19
LIME1-201ENST00000309546 TMTC3Q6ZXV5 915 aa22.48■■□□□ 1.19
LIME1-201ENST00000309546 SGMS1Q86VZ5 419 aa22.48■■□□□ 1.19
LIME1-201ENST00000309546 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.48■■□□□ 1.19
LIME1-201ENST00000309546 FANCBQ8NB91 859 aa22.48■■□□□ 1.19
LIME1-201ENST00000309546 AFAP1L1Q8TED9 768 aa22.48■■□□□ 1.19
LIME1-201ENST00000309546 TET1Q8NFU7 2136 aa22.48■■□□□ 1.19
LIME1-201ENST00000309546 HAS3O00219 553 aa22.47■■□□□ 1.19
LIME1-201ENST00000309546 PIK3CDO00329 1044 aa22.47■■□□□ 1.19
LIME1-201ENST00000309546 NOP56O00567 594 aaKnown RBP22.47■■□□□ 1.19
LIME1-201ENST00000309546 MEIS2O14770 477 aa22.47■■□□□ 1.19
LIME1-201ENST00000309546 STAM2O75886 525 aa22.47■■□□□ 1.19
LIME1-201ENST00000309546 HOXD8P13378 290 aaPredicted RBP22.47■■□□□ 1.19
LIME1-201ENST00000309546 ADCK5Q3MIX3 580 aa22.47■■□□□ 1.19
LIME1-201ENST00000309546 RASEFQ8IZ41 740 aa22.47■■□□□ 1.19
LIME1-201ENST00000309546 DHX38Q92620 1227 aaKnown RBP22.47■■□□□ 1.19
LIME1-201ENST00000309546 INPP4AQ96PE3 977 aaPredicted RBP22.47■■□□□ 1.19
LIME1-201ENST00000309546 BCAS3Q9H6U6 928 aa22.47■■□□□ 1.19
LIME1-201ENST00000309546 YBX2Q9Y2T7 364 aaKnown RBP22.47■■□□□ 1.19
LIME1-201ENST00000309546 MYO9BQ13459 2157 aa22.46■■□□□ 1.19
LIME1-201ENST00000309546 FIBPO43427 364 aa22.46■■□□□ 1.19
LIME1-201ENST00000309546 SELPP16109 830 aa22.46■■□□□ 1.19
LIME1-201ENST00000309546 ICAM3P32942 547 aa22.46■■□□□ 1.19
LIME1-201ENST00000309546 SEMA3FQ13275 785 aa22.46■■□□□ 1.19
LIME1-201ENST00000309546 APOA5Q6Q788 366 aa22.46■■□□□ 1.19
LIME1-201ENST00000309546 LRRC8DQ7L1W4 858 aa22.46■■□□□ 1.19
LIME1-201ENST00000309546 DHX32Q7L7V1 743 aaKnown RBP22.46■■□□□ 1.19
LIME1-201ENST00000309546 HEATR3Q7Z4Q2 680 aa22.46■■□□□ 1.19
LIME1-201ENST00000309546 PRDM12Q9H4Q4 367 aa22.46■■□□□ 1.19
LIME1-201ENST00000309546 PSTPIP2Q9H939 334 aa22.46■■□□□ 1.19
LIME1-201ENST00000309546 SLC28A3Q9HAS3 691 aa22.46■■□□□ 1.19
LIME1-201ENST00000309546 SPATA31C2B4DYI2 1134 aa22.45■■□□□ 1.18
LIME1-201ENST00000309546 MYOGP15173 224 aa22.45■■□□□ 1.18
LIME1-201ENST00000309546 ZNF200P98182 395 aaPredicted RBP22.45■■□□□ 1.18
LIME1-201ENST00000309546 SP4Q02446 784 aa22.45■■□□□ 1.18
LIME1-201ENST00000309546 NEDD9Q14511 834 aa22.45■■□□□ 1.18
LIME1-201ENST00000309546 UBE2SQ16763 222 aa22.45■■□□□ 1.18
LIME1-201ENST00000309546 PCNX4Q63HM2 1172 aa22.45■■□□□ 1.18
LIME1-201ENST00000309546 CYFIP1Q7L576 1253 aa22.45■■□□□ 1.18
LIME1-201ENST00000309546 NLRX1Q86UT6 975 aa22.45■■□□□ 1.18
LIME1-201ENST00000309546 GAS2L1Q99501 681 aaPredicted RBP22.45■■□□□ 1.18
LIME1-201ENST00000309546 LGALS2P05162 132 aa22.44■■□□□ 1.18
LIME1-201ENST00000309546 EXOSC10Q01780 885 aaKnown RBP22.44■■□□□ 1.18
LIME1-201ENST00000309546 KRT32Q14532 448 aa22.44■■□□□ 1.18
LIME1-201ENST00000309546 RTN1Q16799 776 aa22.44■■□□□ 1.18
LIME1-201ENST00000309546 PPP2R2DQ66LE6 453 aa22.44■■□□□ 1.18
LIME1-201ENST00000309546 CNTNAP5Q8WYK1 1306 aa22.44■■□□□ 1.18
LIME1-201ENST00000309546 C16orf70Q9BSU1 422 aa22.44■■□□□ 1.18
LIME1-201ENST00000309546 RBM28Q9NW13 759 aaKnown RBP22.44■■□□□ 1.18
LIME1-201ENST00000309546 BRPF3Q9ULD4 1205 aa22.44■■□□□ 1.18
LIME1-201ENST00000309546 NAP1L2Q9ULW6 460 aaPredicted RBP22.44■■□□□ 1.18
LIME1-201ENST00000309546 PCDHA11Q9Y5I1 949 aa22.44■■□□□ 1.18
LIME1-201ENST00000309546 EYSQ5T1H1 3165 aa22.44■■□□□ 1.18
LIME1-201ENST00000309546 SPDYE3A6NKU9 549 aa22.43■■□□□ 1.18
LIME1-201ENST00000309546 ZBTB43O43298 467 aa22.43■■□□□ 1.18
LIME1-201ENST00000309546 CKBP12277 381 aa22.43■■□□□ 1.18
LIME1-201ENST00000309546 PTK7Q13308 1070 aa22.43■■□□□ 1.18
LIME1-201ENST00000309546 XRRA1Q6P2D8 792 aa22.43■■□□□ 1.18
LIME1-201ENST00000309546 METTL7BQ6UX53 244 aa22.43■■□□□ 1.18
LIME1-201ENST00000309546 SLC9A7Q96T83 725 aa22.43■■□□□ 1.18
LIME1-201ENST00000309546 PTPRSQ13332 1948 aa22.43■■□□□ 1.18
LIME1-201ENST00000309546 KLF18A0A0U1RQI7 1052 aa22.42■■□□□ 1.18
LIME1-201ENST00000309546 GOLGA8AA7E2F4 631 aa22.42■■□□□ 1.18
LIME1-201ENST00000309546 GOLGA8BA8MQT2 603 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms