RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 RASGRP4Q8TDF6 673 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 LRRC37A3O60309 1634 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 PRR29P0C7W0 189 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 ZBED6P86452 979 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 MUM1L1Q5H9M0 696 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 SHC4Q6S5L8 630 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 NIM1KQ8IY84 436 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 GJA3Q9Y6H8 435 aa16.82■□□□□ 0.28
SHH-201ENST00000297261 SPDYE3A6NKU9 549 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 PTPREP23469 700 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 KCNJ6P48051 423 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 SYCE1Q8N0S2 351 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 TBC1D16Q8TBP0 767 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 IGDCC4Q8TDY8 1250 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 KLHL29Q96CT2 875 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 PCDHB13Q9Y5F0 798 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 PHRF1Q9P1Y6 1649 aaKnown RBP16.81■□□□□ 0.28
SHH-201ENST00000297261 CDK8P49336 464 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 MUM1Q2TAK8 710 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 IQCDQ96DY2 449 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 SERPINB13Q9UIV8 391 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 MROH7-TTC4A0A0A0MT08 1334 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 CTDNEP1O95476 244 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 ARHGAP44Q17R89 818 aa16.81■□□□□ 0.28
SHH-201ENST00000297261 CCDC169A6NNP5 214 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 USP14P54578 494 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 KRT25Q7Z3Z0 450 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 TBC1D1Q86TI0 1168 aaPredicted RBP16.8■□□□□ 0.28
SHH-201ENST00000297261 TXNRD3Q86VQ6 643 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 TRPM3Q9HCF6 1732 aaPredicted RBP16.8■□□□□ 0.28
SHH-201ENST00000297261 WTIPA6NIX2 430 aaPredicted RBP16.8■□□□□ 0.28
SHH-201ENST00000297261 DESP17661 470 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 DHX9Q08211 1270 aaKnown RBP16.8■□□□□ 0.28
SHH-201ENST00000297261 CALCRLQ16602 461 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 TCP11X2Q5H9J9 407 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 REXO1Q8N1G1 1221 aaKnown RBP16.8■□□□□ 0.28
SHH-201ENST00000297261 H2AFZP0C0S5 128 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 ADCY7P51828 1080 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 EN1Q05925 392 aaPredicted RBP16.8■□□□□ 0.28
SHH-201ENST00000297261 ZNF658Q5TYW1 1059 aaPredicted RBP16.8■□□□□ 0.28
SHH-201ENST00000297261 HHATQ5VTY9 493 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 H2AFVQ71UI9 128 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 MYOCDQ8IZQ8 938 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 BIN2Q9UBW5 565 aaPredicted RBP16.8■□□□□ 0.28
SHH-201ENST00000297261 TCP10L2B9ZVM9 353 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 PRPF3O43395 683 aaKnown RBP16.8■□□□□ 0.28
SHH-201ENST00000297261 STAMBPO95630 424 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 ADCY1Q08828 1119 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 SP8Q8IXZ3 490 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 LRRN4CLQ8ND94 238 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 BICD1Q96G01 975 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 RWDD2AQ9UIY3 292 aa16.8■□□□□ 0.28
SHH-201ENST00000297261 ALS2Q96Q42 1657 aa16.79■□□□□ 0.28
SHH-201ENST00000297261 RIC1Q4ADV7 1423 aa16.79■□□□□ 0.28
SHH-201ENST00000297261 KIF28PB7ZC32 967 aa16.79■□□□□ 0.28
SHH-201ENST00000297261 CERKLQ49MI3 558 aaPredicted RBP16.79■□□□□ 0.28
SHH-201ENST00000297261 FYB2Q5VWT5 728 aa16.79■□□□□ 0.28
SHH-201ENST00000297261 EHMT1Q9H9B1 1298 aa16.79■□□□□ 0.28
SHH-201ENST00000297261 TPX2Q9ULW0 747 aaKnown RBP16.79■□□□□ 0.28
SHH-201ENST00000297261 SLCO1A2P46721 670 aa16.79■□□□□ 0.28
SHH-201ENST00000297261 RBBP5Q15291 538 aaKnown RBP16.79■□□□□ 0.28
SHH-201ENST00000297261 LLGL1Q15334 1064 aa16.79■□□□□ 0.28
SHH-201ENST00000297261 USP17L2Q6R6M4 530 aa16.79■□□□□ 0.28
SHH-201ENST00000297261 SMCR8Q8TEV9 937 aaPredicted RBP16.79■□□□□ 0.28
SHH-201ENST00000297261 FRMD4BQ9Y2L6 1034 aa16.79■□□□□ 0.28
SHH-201ENST00000297261 ECM2O94769 699 aaPredicted RBP16.79■□□□□ 0.28
SHH-201ENST00000297261 CACNB3P54284 484 aa16.79■□□□□ 0.28
SHH-201ENST00000297261 RETREG2Q8NC44 543 aa16.79■□□□□ 0.28
SHH-201ENST00000297261 CRAMP1Q96RY5 1269 aa16.79■□□□□ 0.28
SHH-201ENST00000297261 FUT8Q9BYC5 575 aa16.79■□□□□ 0.28
SHH-201ENST00000297261 KIF11P52732 1056 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 METTL16Q86W50 562 aaKnown RBP16.78■□□□□ 0.28
SHH-201ENST00000297261 P2RX5Q93086 422 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 ROBO1Q9Y6N7 1651 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 C21orf2O43822 256 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 SMIM24O75264 130 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 STAT1P42224 750 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 PLTPP55058 493 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 DGKHQ86XP1 1220 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 NOA1Q8NC60 698 aaKnown RBP16.78■□□□□ 0.28
SHH-201ENST00000297261 ACTR5Q9H9F9 607 aaPredicted RBP16.78■□□□□ 0.28
SHH-201ENST00000297261 KDM3BQ7LBC6 1761 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 TRIM49BA6NDI0 452 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 ST3GAL1Q11201 340 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 TMTC3Q6ZXV5 915 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 RDH13Q8NBN7 331 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 MTA3Q9BTC8 594 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 CXorf56Q9H5V9 222 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 TTC26A0AVF1 554 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 ATP1A1P05023 1023 aaKnown RBP16.78■□□□□ 0.28
SHH-201ENST00000297261 COL9A3Q14050 684 aaPredicted RBP16.78■□□□□ 0.28
SHH-201ENST00000297261 TMED8Q6PL24 325 aaPredicted RBP16.78■□□□□ 0.28
SHH-201ENST00000297261 SPATA24Q86W54 205 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 MB21D1Q8N884 522 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 TRIM6Q9C030 488 aaPredicted RBP16.78■□□□□ 0.28
SHH-201ENST00000297261 ARHGEF10LQ9HCE6 1279 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 PCDHA13Q9Y5I0 950 aa16.78■□□□□ 0.28
SHH-201ENST00000297261 CLRN2A0PK11 232 aa16.77■□□□□ 0.28
SHH-201ENST00000297261 RAD17O75943 681 aa16.77■□□□□ 0.28
SHH-201ENST00000297261 SUN1O94901 812 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms