RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 ALDH3A1P30838 453 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 EMBQ6PCB8 327 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 FAM186BQ8IYM0 893 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 PCIF1Q9H4Z3 704 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 DUSP10Q9Y6W6 482 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 SORBS3O60504 671 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 RPSAP08865 295 aaKnown RBP5.04□□□□□ -1.6
VPS13C-201ENST00000249837 BEND6Q5SZJ8 279 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-201ENST00000249837 UNC13DQ70J99 1090 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 KIAA0825Q8IV33 1275 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 SPICE1Q8N0Z3 855 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 COL15A1P39059 1388 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 PNPLA7Q6ZV29 1317 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 PBKQ96KB5 322 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 GLT8D2Q9H1C3 349 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 SWAP70Q9UH65 585 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 PGRMC1O00264 195 aaKnown RBP5.04□□□□□ -1.6
VPS13C-201ENST00000249837 PCP11498 1178 aaKnown RBP5.04□□□□□ -1.6
VPS13C-201ENST00000249837 ZNF131P52739 623 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 GRM4Q14833 912 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 FOXR1Q6PIV2 292 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 LACRTQ9GZZ8 138 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 ARHGEF10LQ9HCE6 1279 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 GCNT4Q9P109 453 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 AKAP12Q02952 1782 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 LAD1O00515 517 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 CAPN12Q6ZSI9 719 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 FBXO11Q86XK2 927 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 FAM178BQ8IXR5 827 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 SYCE1Q8N0S2 351 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 TBC1D22AQ8WUA7 517 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 FAM84BQ96KN1 310 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-201ENST00000249837 MYH11P35749 1972 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 IFNB1P01574 187 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 BMP6P22004 513 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 ZKSCAN8Q15776 578 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-201ENST00000249837 RSRC2Q7L4I2 434 aaKnown RBP5.04□□□□□ -1.6
VPS13C-201ENST00000249837 DCP1AQ9NPI6 582 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-201ENST00000249837 SNX12Q9UMY4 172 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 XDHP47989 1333 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 CNTRLQ7Z7A1 2325 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 ORC4O43929 436 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 GDF11O95390 407 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 NR1D1P20393 614 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 LMNB1P20700 586 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 EPHB4P54760 987 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 MXRA7P84157 204 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 TRAF1Q13077 416 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 EARS2Q5JPH6 523 aaKnown RBP5.04□□□□□ -1.6
VPS13C-201ENST00000249837 LRRC1Q9BTT6 524 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 PHF20Q9BVI0 1012 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 EFCC1Q9HA90 598 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 KDM3AQ9Y4C1 1321 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 TDP2O95551 362 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 PLTPP55058 493 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 TRIM65Q6PJ69 517 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 SPATA4Q8NEY3 305 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 TBC1D31Q96DN5 1066 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 IL17RAQ96F46 866 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 IFT74Q96LB3 600 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 CDHR2Q9BYE9 1310 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 SMIM22K7EJ46 135 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 SLCO1A2P46721 670 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 UBXN2AP68543 259 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 STK4Q13043 487 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 ZNF211Q13398 564 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-201ENST00000249837 CCDC197Q8NCU1 140 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 MYCBPQ99417 103 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-201ENST00000249837 MLXIPLQ9NP71 852 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS13C-201ENST00000249837 C7orf25Q9BPX7 421 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 EMILIN3Q9NT22 766 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 EHD2Q9NZN4 543 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 LMTK3Q96Q04 1460 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 MYO9BQ13459 2157 aa5.04□□□□□ -1.6
VPS13C-201ENST00000249837 POTEB3A0JP26 581 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 POTECB2RU33 542 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 ATP2B4P23634 1241 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 SNCBQ16143 134 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 ASPRV1Q53RT3 343 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 POTEBQ6S5H4 581 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 INTS9Q9NV88 658 aaKnown RBP5.03□□□□□ -1.6
VPS13C-201ENST00000249837 STK17AQ9UEE5 414 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 IRAK1P51617 712 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 CNKSR2Q8WXI2 1034 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 METTL14Q9HCE5 456 aaKnown RBP5.03□□□□□ -1.6
VPS13C-201ENST00000249837 ADAMTS1Q9UHI8 967 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 MYH3P11055 1940 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 A0A0U1RQJ8 604 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 A0A1W2PQC6 194 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 CTNND1O60716 968 aaKnown RBP5.03□□□□□ -1.6
VPS13C-201ENST00000249837 PLEKP08567 350 aaPredicted RBP5.03□□□□□ -1.6
VPS13C-201ENST00000249837 APBA1Q02410 837 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 CTTNQ14247 550 aaKnown RBP5.03□□□□□ -1.6
VPS13C-201ENST00000249837 CYP4F22Q6NT55 531 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 NT5C3AQ9H0P0 336 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 INTS13Q9NVM9 706 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 CEP83Q9Y592 693 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 GON4LQ3T8J9 2241 aa5.03□□□□□ -1.6
VPS13C-201ENST00000249837 ATP2A1O14983 1001 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms