RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Kcnv2Q8CFS6 562 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Zc3h4Q6ZPZ3 1304 aaKnown RBP12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Alox15P39654 663 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Adcy7P51829 1099 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Kcnk9Q3LS21 402 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Miga1Q4QQM5 600 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Dennd2cQ6P9P8 914 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 E2f8Q58FA4 860 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Ipo11Q8K2V6 975 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Ppil4Q9CXG3 492 aaKnown RBP12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Rabgef1Q9JM13 491 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 A630010A05RikA9C473 232 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Mroh8E9PYI4 1049 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Faf1P54731 649 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Cyth2P63034 400 aaKnown RBP12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Hspd1P63038 573 aaKnown RBP12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Ric8aQ3TIR3 530 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Ankk1Q8BZ25 745 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Abi1Q8CBW3 481 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Rassf9Q8K342 435 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Pdcd7Q9WTY1 482 aa12.86□□□□□ -0.35
Trim56-201ENSMUST00000054384 Pbrm1Q8BSQ9 1634 aaKnown RBP12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Serpinb8O08800 374 aaKnown RBP12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Plbd2Q3TCN2 594 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 AmphQ7TQF7 686 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Rnf112Q96DY5 654 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Rrp15Q9CYX7 281 aaKnown RBP12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 A0A1W2P6Q8 802 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gm9048A0A1W2P7H4 802 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 A0A1W2P7Z8 802 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gm9046A0A1W2P855 802 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Parp3Q3ULW8 533 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Clic6Q8BHB9 596 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Spire2Q8K1S6 718 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Zbtb18Q9WUK6 522 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Apol11bE9PUZ0 337 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Ccdc62E9PVD1 701 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Top3aO70157 1003 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Ankrd13cQ3UX43 541 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Mmrn2A6H6E2 943 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Tac1P41539 130 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Serpinb6Q60854 378 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Rab3ipQ68EF0 428 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Serpina3bQ8BYY9 420 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Spata4Q8K3V1 295 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Hip1Q8VD75 1029 aaKnown RBP12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Psmd10Q9Z2X2 231 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Rbm43Q99J64 343 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Col17a1Q07563 1470 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Ces1dQ8VCT4 565 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Bola3Q8CEI1 110 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Grk2Q99MK8 689 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Rpa3Q9CQ71 121 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 Tfap4Q9JIZ5 338 aa12.85□□□□□ -0.35
Trim56-201ENSMUST00000054384 1700011I03RikE9PYL8 271 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Tcp11Q01755 566 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Wdr24Q8CFJ9 790 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Q922C1 641 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Abt1Q9QYL7 269 aaKnown RBP12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Fam81bA0A140LI28 432 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Dthd1E9PZX1 795 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Ephb4P54761 987 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Uap1Q91YN5 522 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Chmp2aQ9DB34 222 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gfpt2Q9Z2Z9 682 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Adcy9P51830 1353 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Sorbs1Q62417 1290 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Lca5Q80ST9 704 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Plcg2Q8CIH5 1265 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gdap1l1Q8VE33 370 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Slc35f6Q8VE96 372 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 AdarQ99MU3 1178 aaKnown RBP12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 E2f6O54917 272 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Ncoa5Q91W39 579 aaKnown RBP12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 AceP09470 1312 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Olfr247E9PVJ7 320 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Olfr819K7N727 320 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 FosP01101 380 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Asap3Q5U464 904 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Akap7Q7TN79 314 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Tex13cD3YU32 604 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Card6E9PWH2 1175 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Git1Q68FF6 770 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gins2Q9D600 185 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Klc4Q9DBS5 619 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Sec24cG3X972 1096 aaKnown RBP12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Lamc2Q61092 1191 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Adat2Q6P6J0 191 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Bend3Q6PAL0 825 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Prrc2bQ7TPM1 1486 aaKnown RBP12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gm28961A0A087WPA5 222 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gm21858A0A087WQ24 222 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Gm9774A0A0A6YVU8 407 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Atp8b1Q148W0 1251 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Itih1Q61702 907 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Nlrp4fQ66X05 959 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Szrd1Q6NXN1 152 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Ddx42Q810A7 929 aaKnown RBP12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 Haus4Q8BFT2 363 aa12.84□□□□□ -0.35
Trim56-201ENSMUST00000054384 4933409G03RikQ8C5U0 320 aa12.84□□□□□ -0.35
Retrieved 100 of 22,080 RNA–protein pairs in 837.1 ms